Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shigella dysenteriae strain:HNCMB 20080

ABSTRACT: Shigella dysenteriae HNCMB 20080 Genome sequencing and assembly

PROVIDER: PRJNA662859 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13039589_1.fastq.gz	Fastqsanger.gz
	SRR13039590_1.fastq.gz	Fastqsanger.gz
	SRR13039590_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Small RNA Sibling ryfA1 Influences Shigella dysenteriae Pathogenesis

Project description:Small regulatory RNAs (sRNAs) of Shigella dysenteriae and other pathogens are vital for the regulation of virulence-associated genes and processes. Here, we characterize RyfA1, one member of a sibling pair of sRNAs produced by S. dysenteriae. Unlike its nearly identical sibling molecule RyfA2, predicted to be encoded almost exclusively by non-pathogenic species, the presence of a gene encoding RyfA1, or a RyfA1-like molecule, is strongly correlated with virulence in a variety of enteropathogens. In S. dysenteriae, the over production of RyfA1 negatively impacts the virulence-associated process of cell-to-cell spread and the expression of ompC, a gene encoding a major outer membrane protein important for the pathogenesis of Shigella. Interestingly, the production of RyfA1 is controlled by a second sRNA, here termed RyfB1; the first incidence of one regulatory small RNA controlling another in S. dysenteriae or any Shigella species.

2017-04-17 | GSE87727 | GEO

Shigella dysenteriae WRSd3

Project description:Shigella dysenteriae WRSd3 Genome sequencing and assembly

| PRJNA219327 | ENA

Shigella dysenteriae SD1D

Project description:Shigella dysenteriae SD1D Genome sequencing and assembly

| PRJNA210600 | ENA

Shigella dysenteriae WRSd5

Project description:Shigella dysenteriae WRSd5 Genome sequencing and assembly

| PRJNA219330 | ENA

Shigella dysenteriae 1617

Project description:Shigella dysenteriae 1617 Genome sequencing

| PRJNA218020 | ENA

Shigella dysenteriae strain:Z12458

Project description:Shigella dysenteriae strain:Z12458 Genome sequencing and assembly

| PRJNA704496 | ENA

Shigella dysenteriae strain:51197

Project description:Shigella dysenteriae strain:51197 Genome sequencing and assembly

| PRJNA314561 | ENA

Shigella dysenteriae 1617

Project description:Shigella dysenteriae 1617 genome sequencing project

| PRJNA48263 | ENA

Shigella dysenteriae

Project description:Whole genome sequencing of Shigella dysenteriae serotype 3, an opportunistic pathogen

| PRJDB2033 | ENA

Shigella dysenteriae

Project description:Whole genome sequencing of Shigella dysenteriae serotype 6, an opportunistic pathogen

| PRJDB2581 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data