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Transcription start site analysis of Streptococcus agalactiae strain BM110

ABSTRACT: Transcription start site analysis of Streptococcus agalactiae strain BM110

PROVIDER: PRJNA663858 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR12651305.fastq.gz	Fastqsanger.gz
	SRR12651306.fastq.gz	Fastqsanger.gz
	SRR12651307.fastq.gz	Fastqsanger.gz
	SRR12651308.fastq.gz	Fastqsanger.gz
	SRR12651309.fastq.gz	Fastqsanger.gz

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Transcription start site analysis of Streptococcus agalactiae strain BM110

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Project description:Streptococcus agalactiae, also known as Group B streptococcus, emerged in the 1960s as a leading cause of septicemia and meningitis in neonates. It is also an increasing cause of infections in adults with underlying diseases. To characterize regulatory elements in this species we performed a genome-wide transcription start site (TSS) profiling and whole-transcript sequencing. TSS were identified by using a differential RNA-seq strategy, based on selective Tobacco Acid Pyrophosphatase (TAP) treatment and adapter ligation, which differentiates primary transcripts and processed RNAs. The accuracy and sensitivity of TSS identification were increased by combining differential RNA-seq analyses under eight conditions corresponding to variations in growth conditions and genetic backgrounds. Whole-transcript sequencing used a two-step adaptor ligation-based directional RNA-seq protocol and was performed under two experimental conditions with triplicate experiments to assess variations in gene expression in response to an acid stress

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Project description:The purpose of this study was to determine what S. agalactiae genes are under the control of the MtaR regulatory protein. Inactivation of the Streptococcus agalactiae mtaR gene resulted in the downregulation of 11 genes and the upregulation of 1 gene in the mtaR mutant. Genes involved in the uptake of methionine and a gene involved in the degradation of peptides were downregulated. Also, genes involved in the transport and biosynthesis of arginine were downregulated. The gene encoding the virulence factor cspA was downregulated, as well as a gene showing similarity to plasminogen activators. Thus, the expression of genes involved in both metabolic functions and virulence are under the influence of mtaR.

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