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Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade I

ABSTRACT: Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade I

PROVIDER: PRJNA664788 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR12683349.fastq.gz	Fastqsanger.gz
	SRR12683350.fastq.gz	Fastqsanger.gz
	SRR12683351.fastq.gz	Fastqsanger.gz
	SRR12683352.fastq.gz	Fastqsanger.gz
	SRR12683353.fastq.gz	Fastqsanger.gz

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Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade

Project description:Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade

| PRJNA664789 | ENA

Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade II

Project description:Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade II

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Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade III

Project description:Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade III

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Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade III

Project description:After ischemic stroke, the brain initiates intensive communication with the immune system, and acetylcholine contributes to this process. Stroke triggers peripheral immunosuppression leading to increased susceptibility to infections; and post-stroke pneumonia is linked with poor stroke outcome, but the responsible processes are yet unknown. We discovered a “change of guards” where microRNA levels decreased but small transfer RNA fragments (tRFs) accumulated in post-stroke blood cells. This molecular switch may re-balance acetylcholine signaling in CD14+ monocytes by regulating their gene expression and modulating post-stroke immunity. Our observations point to tRFs as new molecular regulators of post-stroke immune responses that may become potential therapeutic targets.

2020-12-31 | GSE158313 | GEO

Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade II

2020-12-31 | GSE158312 | GEO

Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade I

2020-12-31 | GSE158311 | GEO

Transfer RNA fragments replace microRNA regulators of the cholinergic post-stroke immune blockade

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-12-31 | GSE158314 | GEO

Transfer RNA fragments replace microRNA regulators of the cholinergic poststroke immune blockade.

Project description:Stroke is a leading cause of death and disability. Recovery depends on a delicate balance between inflammatory responses and immune suppression, tipping the scale between brain protection and susceptibility to infection. Peripheral cholinergic blockade of immune reactions fine-tunes this immune response, but its molecular regulators are unknown. Here, we report a regulatory shift in small RNA types in patient blood sequenced 2 d after ischemic stroke, comprising massive decreases of microRNA levels and concomitant increases of transfer RNA fragments (tRFs) targeting cholinergic transcripts. Electrophoresis-based size-selection followed by qRT-PCR validated the top six up-regulated tRFs in a separate cohort of stroke patients, and independent datasets of small and long RNA sequencing pinpointed immune cell subsets pivotal to these responses, implicating CD14+ monocytes in the cholinergic inflammatory reflex. In-depth small RNA targeting analyses revealed the most-perturbed pathways following stroke and implied a structural dichotomy between microRNA and tRF target sets. Furthermore, lipopolysaccharide stimulation of murine RAW 264.7 cells and human CD14+ monocytes up-regulated the top six stroke-perturbed tRFs, and overexpression of stroke-inducible tRF-22-WE8SPOX52 using a single-stranded RNA mimic induced down-regulation of immune regulator Z-DNA binding protein 1. In summary, we identified a "changing of the guards" between small RNA types that may systemically affect homeostasis in poststroke immune responses, and pinpointed multiple affected pathways, which opens new venues for establishing therapeutics and biomarkers at the protein and RNA level.

| S-EPMC7768686 | biostudies-literature

Engineering transcriptional regulators using REPLACE

Project description:Engineering transcriptional regulators using REPLACE

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Engineering transcriptional regulators using REPLACE

Project description:Transcriptional regulators are fundamental elements in synthetic biology. We sought to use REPLACE to evolve synthetic transcriptional regulators. Through weeks of directed evolution experiments, we succesufuly modified the sensitivity of TetR and PadR to ligand molecules.

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