Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Salt stress response lncRNAs and circRNAs in sugar beet

PROVIDER: PRJNA666384 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12739600_1.fastq.gz	Fastqsanger.gz
	SRR12739600_2.fastq.gz	Fastqsanger.gz
	SRR12739601_1.fastq.gz	Fastqsanger.gz
	SRR12739601_2.fastq.gz	Fastqsanger.gz
	SRR12739602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Salt stress response gene in sugar beet

| PRJNA666117 | ENA

Cys-SH based quantitative redox proteomics of salt induced response in sugar beet monosomic addition line M14

Project description:Salt stress is a major abiotic stress that limits plant growth, development and productivity. Studying the molecular mechanisms of salt stress tolerance may help to enhance crop productivity. Sugar beet monosomic addition line M14 exhibits tolerance to salt stress. In this work, the changes in the BvM14 proteome and redox proteome induced by salt stress were analyzed using a multiplex iodoTMTRAQ double labeling quantitative proteomics approach. A total of 80 proteins were differentially expressed under salt stress. Interestingly, 42 potential redox-regulated proteins showed differential redox change under salt stress. A large proportion of the redox proteins were involved in photosynthesis, ROS homeostasis and other pathways. For example, ribulose bisphosphate carboxylase/oxygenase activase changed in its redox state after salt treatments. In addition, three redox proteins involved in regulation of ROS homeostasis were also changed in redox states. Transcription levels of eighteen differential proteins and redox proteins were profiled. The results showed involvement of protein redox modifications in BvM14 salt stress response and revealed the short-term salt responsive mechanisms. The knowledge may inform marker-based breeding effort of sugar beet and other crops for stress resilience and high yield.

2021-12-30 | PXD027550 | Pride

Project description:Salt stress response miRNA and their targets in sugar beet

| PRJNA666142 | ENA

LncRNAs and mRNAs of sugar beet in response to drought stress

Project description:LncRNAs and mRNAs of sugar beet in response to drought stress

| PRJNA844986 | ENA

Transcriptomic and metabolomic analyses reveal mechanisms of adaptation to salinity in which carbon and nitrogen metabolism is altered in sugar beet roots

Project description:Here, we first systematically identified and characterized responsive mRNAs expressed in roots of sugar beet at a genome-wide scale, focusing on salt-responsive mRNAs.

2020-03-18 | GSE114968 | GEO

Small RNA Sequencing Reveals a Potential miRNA-Mediated Interaction Network in Sugar Beet Response to Alkaline Stress

Project description:To identify known and novel miRNAs involved in the response and adaptation of sugar beet to short-term and long-term alkaline stress, miRNAs were identified by analysis of the deep sequencing of sRNA

2021-02-28 | GSE113161 | GEO

RNA sequence reveal gene expression mechanism of sugar beet in response to alkaline stress

Project description:Here, we first systematically identified and characterized responsive lncRNAs and mRNAs expressed in leaves of sugar beet at a genome-wide scale, focusing on alkaline-responsive lncRNAs and mRNAs.

2019-11-13 | GSE107627 | GEO

Beta vulgaris (sugar beet) KWS2320DH stress treatments

Project description:Beta vulgaris (sugar beet) KWS2320DH response to salt, light, and heat stress

| PRJEB35822 | ENA

LncRNAs and mRNAs of sugar beet in response to drought stress

Project description:We analyzed lncRNAs and mRNAs from sugar beet leaves under water control treatment using high-throughput sequencing technology and bioinformatic approaches to explore the genome-wide quantity of lncRNAs and mRNAs and their potential function in the regulation of drought responses.

2023-01-12 | GSE205413 | GEO

Salt stress response of root membrane proteome of sugar beet monosomic addition line M14

Project description:Sugar beet M14 line is a unique germplasm, which exhibits salt stress tolerance. Root is the first organ to sense salt stress in the soil. Here we report changes of root membrane proteome of the M14 plants in response to salt treatment (0, 200 and 400 mM NaCl) using iTRAQ based LC-MS/MS quantitative proteomics. A total of 115 differentially expressed membrane proteins (96 increased and 19 decreased) were identified with a fold change greater than 2.0 or less than 0.5. The proteins were mainly involved in the processes of transport, signaling, stress and defense, energy, degradation, and transcription. These results have revealed interesting mechanisms underlying the M14 root response to the salt stress, which may have potential applications toward improving the salt tolerance of crops through genetic engineering and molecular breeding.

2018-08-29 | MSV000082865 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data