Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Soil fungal communities in temperate agroforestry cropland systems

PROVIDER: PRJNA667608 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12779328_1.fastq.gz	Fastqsanger.gz
	SRR12779328_2.fastq.gz	Fastqsanger.gz
	SRR12779329_1.fastq.gz	Fastqsanger.gz
	SRR12779329_2.fastq.gz	Fastqsanger.gz
	SRR12779330_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

The microbial taxonomic and functional compositions in three broadleaved forests in temperate and subtropical zones

Project description:Global warming has shifted climate zones poleward or upward. However, understanding the responses and mechanism of microbial community structure and functions relevant to natural climate zone succession is challenged by the high complexity of microbial communities. Here, we examined soil microbial community in three broadleaved forests located in the Wulu Mountain (WLM, temperate climate), Funiu Mountain (FNM, at the border of temperate and subtropical climate zones), or Shennongjia Mountain (SNJ, subtropical climate).Soils were characterized for geochemistry, Illumina sequencing was used to determine microbial taxonomic communities and GeoChips 5.0 were used to determine microbial functional genes.

2017-01-10 | GSE92233 | GEO

Project description:Soil fungi in a temperate agroforestry system

| PRJNA885015 | ENA

Project description:soil fungal communities in a young agroforestry system

| PRJNA715353 | ENA

Project description:Fungal community of cropland soil

| PRJNA498539 | ENA

Project description:Bacterial community in soil of agroforestry systems

| PRJNA514960 | ENA

rhizosphere metagenome

Project description:Soil fungal communities in temperate forest restoration

| PRJNA598449 | ENA

Project description:Soil fungal communities of Chilean temperate rainforests

| PRJEB19308 | ENA

Project description:Tree rows in temperate agroforestry croplands alter the composition of soil bacterial communities

| PRJNA667193 | ENA

Project description:Sequencing of soil cbbl microorganisms in agroforestry systems

| PRJNA1061765 | ENA

Expression of lignin-degrading enzymes in soils using targeted microarrays

Project description:Microarrays have become established tools for describing microbial systems, however the assessment of expression profiles for environmental microbial communities still presents unique challenges. Notably, the concentration of particular transcripts are likely very dilute relative to the pool of total RNA, and PCR-based amplification strategies are vulnerable to amplification biases and the appropriate primer selection. Thus, we apply a signal amplification approach, rather than template amplification, to analyze the expression of selected lignin-degrading enzymes in soil. Controls in the form of known amplicons and cDNA from Phanerochaete chrysosporium were included and mixed with the soil cDNA both before and after the signal amplification in order to assess the dynamic range of the microarray. We demonstrate that restored prairie soil expresses a diverse range of lignin-degrading enzymes following incubation with lignin substrate, while farmed agricultural soil does not. The mixed additions of control cDNA with soil cDNA indicate that the mixed biomass in the soil does interfere with low abundance transcript changes, nevertheless our microarray approach consistently reports the most robust signals. Keywords: comparative analysis, microbial ecology, soil microbial communities

2009-06-01 | GSE13977 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data