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Next Generation Sequencing Analysis of Transcriptomes of Mice OBs with Left Naris Occlusion

ABSTRACT: Next Generation Sequencing Analysis of Transcriptomes of Mice OBs with Left Naris Occlusion

PROVIDER: PRJNA668915 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR12817014_1.fastq.gz	Fastqsanger.gz
	SRR12817014_2.fastq.gz	Fastqsanger.gz
	SRR12817015_1.fastq.gz	Fastqsanger.gz
	SRR12817015_2.fastq.gz	Fastqsanger.gz
	SRR12817016_1.fastq.gz	Fastqsanger.gz

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Next Generation Sequencing Analysis of Transcriptomes of Mice OBs with Left Naris Occlusion

Project description:Three wild type mice with left naris occlusion were dissected for OBs. Total six OBs were used for searching the genes decreased after left naris occlusion.

2022-01-11 | GSE159427 | GEO

scRNA-seq of the open and closed sides of the mouse olfactory epithelium following unilateral naris occlusion

Project description:The objectives of this study were to use unilateral naris occlusion (UNO) to characterize the effects of olfactory deprivation on 1) gene expression changes within individual cells of the (OE) and 2) changes in the relative abundance of distinct cell types and subtypes.

2020-10-07 | GSE157119 | GEO

TRAP-seq of newly generated olfactory sensory neurons from the open and closed sides of the mouse olfactory epithelium following unilateral naris occlusion

Project description:The objectives of this study were to use unilateral naris occlusion (UNO) in order to characterize the effects of olfactory deprivation on the relative abundance of newly generated olfactory sensory neurons that express specific odorant receptors.

2020-10-07 | GSE157101 | GEO

Effect of unilateral naris occlusion on gene profile in mouse olfactory mucosa.

2012-08-22 | GSE33833 | GEO

Change of gene expression in mouse heart after permanent occlusion of the left anterior descending artery

Project description:We have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to influence the pathogenesis after myocardial infarction. Male mice (8 weeks old) were anesthetized and subjected to permanent occlusion of the left coronary artery [Myocardial infarction (MI) model].

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Rabbit Model of Fetal Tracheal Occlusion for Congenital Diaphragmatic Hernia

Project description:Analysis of embronic day 30.5 (E30.5) fetal rabbit left lung after creation of diapragmatic hernia (DH) at E25 and tracheal occlusion (TO) at E27. The fetuses of timed pregnant New Zealand rabbits were subjected to creation of a left diaphragmatic hernia at E25 with or without tracheal occlusion at E27. At E30.5, the fetuses were sacrificed with collection of the lateral aspect of the left upper lobe for NextGen mRNA sequencing.

2016-07-26 | E-GEOD-84811 | biostudies-arrayexpress

Effect of unilateral naris occlusion on gene profile in mouse olfactory mucosa.

Project description:Unilateral naris occlusion was performed the day after birth in three FVB strain mice. At 25 days of age olfactory mucosa was collected from open nasal fossa, the occluded nasal fossa and from three untreated mice. Total RNA was extracted and gene profiles among these three treatment conditions were compared. The goal of the study was to determine the effect of stimulus deprivation on the genetic profile of olfactory mucosa. There were three treatment conditions: open mucosa, occluded mucosa, and untreated mucosa. Each of these conditions had three biological replicates. Open and occluded however were repeated measures i.e. from the same individuals.

2012-08-22 | E-GEOD-33833 | biostudies-arrayexpress

Rabbit Model of Fetal Tracheal Occlusion for Congenital Diaphragmatic Hernia

Project description:Analysis of embronic day 30.5 (E30.5) fetal rabbit left lung after creation of diapragmatic hernia (DH) at E25 and tracheal occlusion (TO) at E27.

2016-07-26 | GSE84811 | GEO

Activity-dependent gene expression in the mammalian olfactory epithelium

Project description:We access the activity-dependent genes in olfactory neuron cells with unilateral naris occlusion model with mouse.

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Effects of H2be loss of function on gene expression changes in the main olfactory epithelium (MOE) as a result of activity deprivation through unilateral naris occlusion (UNO).

Project description:We have identified a replication-independent histone variant, Hist2h2be (referred to herein as H2be), which is expressed exclusively by olfactory chemosensory neurons. Levels of H2BE are heterogeneous among olfactory neurons, but stereotyped according to the identity of the co-expressed olfactory receptor (OR). Gain- and loss-of-function experiments demonstrate that changes in H2be expression affect olfactory function and OR representation in the adult olfactory epithelium. We show that H2BE expression is reduced by sensory activity and that it promotes neuronal cell death, such that inactive olfactory neurons display higher levels of the variant and shorter life spans. Post-translational modifications (PTMs) of H2BE differ from those of the canonical H2B, consistent with a role for H2BE in altering transcription. We propose a physiological function for H2be in modulating olfactory neuron population dynamics to adapt the OR repertoire to the environment. The objective of generating this dataset was to analyze the effects of H2be loss of function on gene expression changes in the main olfactory epithelium as a result of activity deprivation through unilateral naris occlusion (UNO). This dataset compares gene expression in wild type and H2be-KO main olfactory epithelium (MOE) samples from 5-week old mice that were subjected to unilateral naris occlusion (UNO) for 3 weeks starting from 2 weeks of age. Samples consist of MOE halves that were dissected and carefully removed from the medial bone. Each sample contains tissue from 2 mice (1 female and 1 male). There are three replicates for each genotype (H2be-KO or WT) and UNO side (open or closed) combination.

2012-09-01 | E-GEOD-39516 | biostudies-arrayexpress

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