Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ramlibacter aquaticus strain:LMG 30558

ABSTRACT: Ramlibacter aquaticus strain:LMG 30558 Genome sequencing and assembly

PROVIDER: PRJNA669311 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Ramlibacter paludis strain:XY19

Project description:Ramlibacter paludis strain:XY19 Genome sequencing and assembly

| PRJNA794264 | ENA

Ramlibacter algicola strain:CrO1

Project description:Ramlibacter algicola strain:CrO1 Genome sequencing and assembly

| PRJNA683214 | ENA

Ramlibacter montanisoli strain:B156

Project description:Ramlibacter montanisoli strain:B156 Genome sequencing and assembly

| PRJNA630128 | ENA

Ramlibacter aurantiacus strain:AW1

Project description:Ramlibacter aurantiacus strain:AW1 Genome sequencing and assembly

| PRJNA689934 | ENA

Ramlibacter pallidus strain:HM2

Project description:Ramlibacter pallidus strain:HM2 Genome sequencing and assembly

| PRJNA669496 | ENA

Ramlibacter cellulosilyticus strain:USB13

Project description:Ramlibacter cellulosilyticus strain:USB13 Genome sequencing and assembly

| PRJNA657970 | ENA

Ramlibacter albus strain:GTP1

Project description:Ramlibacter albus strain:GTP1 Genome sequencing and assembly

| PRJNA657987 | ENA

Ramlibacter terrae strain:H242

Project description:Ramlibacter terrae strain:H242 Genome sequencing

| PRJNA630127 | ENA

Vibrio aquaticus strain:BEI207

Project description:Vibrio aquaticus strain:BEI207 Genome sequencing and assembly

| PRJNA509551 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data