Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

ABSTRACT: Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

PROVIDER: PRJNA669868 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

Project description:Purpose: We aim to reveal maize transcriptomic changes in wild-type and Gβ knockout lines. Methods: RNA-seq was used to reveal transcriptome of maize biological replicates of wild-type and Gβ knockout lines. Results: Differnentically expressed transcritps were identified by the comparison of biological replicates of wild-type and Gβ knockout lines. Conclusions: We identified differentially expressed genes in Gβ knockout lines.

2023-10-19 | GSE159634 | GEO

Transcriptomes of maize leaf sheath tissues in wild-type and lncRNA GARR2 knockout lines

Project description:Purpose: We aim to reveal maize transcriptomic changes in wild-type and lncRNA GARR2 knockout lines. Methods: RNA-seq was used to reveal transcriptome of maize biological replicates of wild-type and lncRNA GARR2 knockout lines. Results: Differnentically expressed transcritps were identified by the comparison of biological replicates of wild-type and lncRNA GARR2 knockout lines. Conclusions: We identified differentially expressed genes in lncRNA GARR2 knockout lines.

2023-10-12 | GSE159408 | GEO

Transcriptomes of maize seedlings under water and salinity treatment

Project description:Transcriptomes of maize seedlings under water and salinity treatment

| PRJNA527733 | ENA

Transcriptomes of maize leaf sheath tissues in wild-type and lncRNA GARR2 knockout lines

Project description:Transcriptomes of maize leaf sheath tissues in wild-type and lncRNA GARR2 knockout lines

| PRJNA668793 | ENA

RNA-seq of whole maize seedlings

Project description:RNA-seq from whole V3 maize seedlings (roots and shoots) for the B73 inbred line and A188 x B73 hybrid.

2022-01-27 | GSE175914 | GEO

RNA-seq of whole maize seedlings

Project description:RNA-seq of whole maize seedlings

| PRJNA734299 | ENA

Single cell RNA sequencing of maize root

Project description:The root system is fundamental for maize growth and yield. The primary root system is the most important structure of maize seedlings and is the first organ that emerges at germination, providing water and nutrients for the growing seedlings. However, it is difficult to characterize them at single cell level, due to their complex and heterogeneous cell types. In this study, we profiled the transcriptomes of more than 7000 cells derived from maize root tips of seedlings grown on media with (nitrate+) or without nitrate (nitrate-).

2021-09-03 | GSE183171 | GEO

Transcriptomes of maize seedlings under water and salinity treatment

Project description:Purpose: We aim to reveal maize transcriptomic changes with water and salinity treatment. Methods: RNA-seq were used to reveal transcriptome of maize biological replicates with water and salinity treatment. Results: Differentially expressed transcripts were identified by the comparison of biological replicates with water and salinity treatment. Conclusions: We identified differentially expressed genes in respone to salinity treatment in maize.

2022-03-15 | GSE128432 | GEO

Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize

Project description:Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and smRNA transcriptomes in maize We report an integrated genome-wide analysis of DNA methylation, histone modifications, smRNAs and mRNA transcriptional activity, using maize as a model. We surveyed the epigenomes of the maize inbred line B73 in shoot and root tissue by Illumina/Solexa 1G parallel sequencing after digesting genomic DNA with a methylation-sensitive restriction enzyme and after conducting chromatin immunoprecipitations (ChIP) using antibodies that target specific histone modifications (H3K4me3, H3K9ac, H3K27me3, H3K36me3, respectively). Additionally, we profiled RNA pools (micro RNA (miRNA), siRNA and mRNA) using the same sequencing strategy. Keywords: Epigenetics, mRNA transcription and small RNAs H3K4me3, H3K9ac, H3K27me3, H3K36me3, DNA methylation and mRNA, small RNA profiled from shoots and roots of 14 day-old maize B73 seedlings

2009-04-27 | E-GEOD-15286 | biostudies-arrayexpress

Root transcriptional profile of maize seedlings treated with protein hydolysate, free amino acids and inorganic nitrogen.

Project description:Different forms of N can affect plant metabolism. Differences can be observed at physiological and transcriptional levels comparing maize 4-day-old maize seedlings tretaed for three days with three different N forms: protein hydrolysates (SICIT2000 Spa), inorganic nitrogen (NH4H2PO4) or a mixture of free amino acids.

2017-04-26 | GSE89535 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data