Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Soil fungal communities during the reclamation chronosequence of an open-cast coal mining dump

PROVIDER: PRJNA670299 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12853708.fastq.gz	Fastqsanger.gz
	SRR12853709.fastq.gz	Fastqsanger.gz
	SRR12853710.fastq.gz	Fastqsanger.gz
	SRR12853711.fastq.gz	Fastqsanger.gz
	SRR12853712.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

Project description:Arbuscular mycorrhizal fungal community structure along a post-coal mining reclamation chronosequence

| PRJNA547880 | ENA

ChronoseqITS

Project description:Soil fungi across agriculture reclamation chronosequence

| PRJEB51095 | ENA

Embryonic exposure to an aqueous coal dust extract results in gene expression alterations associated with development and function of connective tissue and the hematological system in zebrafish

Project description:Coal is a major energy source that generates diverse environmental impacts through its production, primarily by the release of coal dust particles. An aqueous coal dust extract was obtained from a mineral sample taken from one of the largest coal mines in Colombia (La Loma, Cesar), trace elements by ICP/MS were measured, and its toxicity evaluated using the zebrafish (Danio rerio) vertebrate model. In this study, zebrafish embryos were exposed to different concentrations of aqueous coal extract (0, 0.1, 1, 10, 100 and 1000 parts per million (ppm; μg/mL) to establish acute toxicity, as well as morphological and transcriptome alterations. Trace elements within the coal extract yielding the highest concentrations included Sr, Zn, Ba, As, Cu, Se, Li, Ni, Sb, Rb, Co, and Cr. In addition, Cd and Pb were found in lower concentrations. No significant difference in mortality was observed with survival near 90% in all treatments. A significant decrease in rate of hatching was observed in the 0.1 and 1000 ppm treatment groups at 72 hpf. Furthermore, no significant differences in total body length, head length, or head diameter was observed in any of the treatment groups. Transcriptomic results of zebrafish larvae revealed alterations in 77, 61, and 1,376 genes in the 1, 10, and 100 ppm treatments, respectively. Gene ontology analysis revealed gene alterations associated with hematological system development and function, tissue morphology and development, connective tissue development and function, and embryonic development. Overall, these findings are the first to identify gene expression alterations in response to a developmental aqueous coal dust residue from coal mining.

2017-11-30 | GSE94997 | GEO

Single cell RNA sequencing of rat lung tissues to characterize blast exposure-induced cell heterogeneity

Project description:Coal mining carries inherent risks of catastrophic gas explosions capable of inflicting severe lung injury. Using a rat model, we explored mechanisms underlying alveolar epithelial damage and repair following a gas explosion. By performing scRNA-sequencing, we revealed that alveolar epithelial cells exhibited the most profound transcriptomic changes after gas explosion compared to other pulmonary cell types.

2024-01-18 | GSE252844 | GEO

Soil Metaproteome_Arenito2 land rehab chronosequence

Project description:Soil metaproteome of a sand mine land rehabilitation chronosequence

2021-07-14 | MSV000087821 | MassIVE

Project description:Continuing legacy of coal mining in a high Arctic soil fungal biota after six decades

| PRJNA561666 | ENA

Buccal epithelial gene expression in smoky and smokeless coal users

Project description:Exposure to indoor air pollution generated from the combustion of solid fuels is a major risk factor for a spectrum of cardiovascular and respiratory diseases, including lung cancer. In Chinaâs rural counties of Xuanwei and Fuyuan, lung cancer rates are among the highest in the country. While the elevated disease risk in this population has been linked to the widespread usage of bituminous (smoky) coal as compared to anthracite (smokeless) coal, the underlying physiologic mechanism that smoky coal induces in comparison to other fuel types is unclear. As we have previously used airway gene-expression profiling to gain molecular insights into the physiologic effects of cigarette smoke, here we profiled the buccal epithelium of residents exposed to the burning of smoky and smokeless coal in order to understand the physiologic effects of solid fuels. Buccal mucosa scrapings were collected from healthy, non-smoking female residents of Xuanwei and Fuyuan counties who burn coal indoors. RNA was isolated and hybridized onto Affymetrix Human gene 1.0 ST GeneChips, capturing the gene-expression response of (n=26) smoky coal users and (n=9) smokeless coal users. 24-hour indoor personal exposure levels (PM2.5, Polycyclic Aromatic Hydrocarbons) were also captured during this sampling period.

2015-11-02 | E-GEOD-64277 | biostudies-arrayexpress

Project description:Effects of grazing and mining on the soil fungal community in the grassland coal-mining area of Inner Mongolia, northern China

| PRJNA682369 | ENA

GeoChip data from fungal community in Alaskan tundra soil

Project description:The effects of two years' winter warming on the overall fungal functional gene structure in Alaskan tundra soil were studies by the GeoChip 4.2 Resuts showed that two years' winter warming changed the overall fungal functional gene structure in Alaskan tundra soil.

2019-03-07 | GSE127899 | GEO

soil metagenome

Project description:reclamation soil Metagenome

| PRJNA309592 | ENA