Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A. thaliana WT and ICT1 mutant treated vs. non treated with I3C

ABSTRACT: A. thaliana WT and ICT1 mutant treated vs. non treated with I3C

PROVIDER: PRJNA672150 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12903426.fastq.gz	Fastqsanger.gz
	SRR12903427.fastq.gz	Fastqsanger.gz
	SRR12903428.fastq.gz	Fastqsanger.gz
	SRR12903429.fastq.gz	Fastqsanger.gz
	SRR12903430.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

A. thaliana WT and ICT1 mutant treated vs. non treated with I3C

Project description:We work with Arabidopsis thaliana. One of the things we focus on is a secondary metabolite named Indol 3 carbinol (I3C). This molecule is synthesized following insect attack (wounding). We have noticed that addition of I3C to the growth medium causes inhibition of plant/bacterial/fungal growth. We have discovered that I3C also affects different pathways in the plant. By screening overexpression library we have found Arabidopsis mutants that overexpress S30 gene (ribosomal subunit of 40s) are tolerant to the addition of I3C (their growth is less affected by the addition of I3C). To understand better I3C mode of action we have planned the following transcriptome experiment: 1. To see what are the pathways activated following wounding, we took the wt Arabidopsis thaliana (Col-0) and kept one group of plants untreated (control) and the other was wounded (8 hours). 2. To see what are the pathways activated following incubation with 2 concentrations of I3C, we took the wt Arabidopsis thaliana (Col-0) and kept one group of plants untreated (control) and the other was incubated for 2 hours with 200µM (physiological concentration) and 400µM I3C. 3. To see if there are any differences in gene expression between the wt and the mutants, we took wt and 2 I3C tolerant mutants. Neither of them was treated. 4. To see if in the mutant other pathways are activated following incubation with I3C, both mutants were incubated in I3C. In all cases we have used the roots only for RNA extraction.

2020-10-27 | GSE160180 | GEO

RNA-seq WT vs TLE3KO ( treated with AR inhibitor)

Project description:RNA-seq WT vs TLE3KO ( treated with AR inhibitor)

| PRJNA468819 | ENA

Arabidopsis stn8 mutant vs WT

Project description:Comparison of the Arabidopsis stn8 mutant invlolved in state transition vs WT Keywords: other

2005-10-20 | GSE2621 | GEO

Arabidopsis stn7 mutant vs WT

Project description:Comparison of the Arabidopsis stn7 mutant invlolved in state transition vs WT Keywords: other

2005-10-20 | GSE2620 | GEO

UPAB1 secretome analysis of hlyD1 vs hlyD2 vs Wt.

Project description:A. baumannii UPAB1 secretome analysis of hlyD1 vs Wt and hlyD2 vs Wt.

2021-08-09 | PXD024736 | Pride

Sectection analysis of A. baumannii (WT vs gspD vs HlyD1 vs HlyD2 vs RTX)

Project description:Comparsion of the secretome of A. baumannii (WT vs gspD vs HlyD1 vs HlyD2 vs RTX)

2022-04-06 | PXD030460 | Pride

Transcription profiling of A. thaliana L.er vs fe-1

Project description:The Arabidopsis thaliana Myb transcription factor, FE, acts as a key regulator of phase transition. In order to identify potential target genes of FE protein, we performed microarray experiments. Using fe-1 and transgenic plants overexpressing GR-tagged FE (35S::FE-GR), we compared transcriptional profiling of WT (L.er) vs fe-1 and Dex-treated 35S::FE-GR vs Mock-treated 35S::FE-GR. Transcriptional profiling of A. thaliana comparing WT (L.er) with the fe-1 mutant

2017-01-01 | GSE42862 | GEO

PTPN2 knockout vs WT

Project description:PTPN2 knockout vs WT

| PRJNA871237 | ENA

Arabidopsis stn7-stn8 double mutant vs WT

Project description:Comparison of the Arabidopsis stn7-stn8 double mutant invlolved in state transition vs WT Keywords: other

2005-10-20 | GSE2622 | GEO

WT vs IFN-gamma treated bulk RNA-seq libraries of HSCs

Project description:WT vs IFN-gamma treated bulk RNA-seq libraries of HSCs

| PRJNA884310 | ENA