Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Botrytis cinerea

ABSTRACT: Response of Botrytis cinerea to biocontrol bacteria at transcriptional level

PROVIDER: PRJNA674011 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13000254_1.fastq.gz	Fastqsanger.gz
	SRR13000254_2.fastq.gz	Fastqsanger.gz
	SRR13000255_1.fastq.gz	Fastqsanger.gz
	SRR13000255_2.fastq.gz	Fastqsanger.gz
	SRR13000256_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Whole Genome Bisulfite Sequencing of Botrytis cinerea

Project description:Analysis of the genome-wide DNA methylation pattern of Botrytis cinerea. Results provide new and important information that DNA methylation is critical for pathogenicity and development of Botrytis cinerea by regulating gene expression.

2019-10-01 | GSE114821 | GEO

PPH24 - Botrytis cinerea Steroidal glycoalkaloids

Project description:Multiple mechanisms of the grey mould Botrytis cinerea to detoxify plant antifungal steroidal glycoalkaloids

2024-03-20 | MSV000094370 | MassIVE

Whole Genome Bisulfite Sequencing Data of Botrytis cinerea

2021-06-01 | GSE131718 | GEO

WRKY33 binding sites in Arabidopsis upon Botrytis cinerea 2100 inoculation

Project description:The Arabidopsis thaliana mutant wrky33 is highly susceptible to the necrotrophic fungus Botrytis cinerea. We identified by ChIP-seq >1680 high-confidence WRKY33 binding sites associated with 1576 genes within the Arabidopsis genome, with all of them being dependent on rapid activation of WRKY33 expression by Botrytis cinerea strain 2100. Genome-wide transcriptional analysis defined 318 genes as direct functional targets at 14 h post inoculation. Comparison between resistant wild-type Columbia-0 and susceptible wrky33 mutant plants revealed that expression of 75% of all WRKY33 regulated targets were down-regulated upon infection, indicating that WRKY33 predominately acts as a repressor. However, WRKY33 appears to possess dual functionality acting either as a repressor or as an activator in a promoter-context dependent manner. Our genome-wide analysis confirmed known WRKY33 targets involved in ethylene and jasmonic acid hormone signaling and phytoalexin biosynthesis, but also uncovered a previously unknown role of abscisic acid (ABA) biosynthesis in the complex regulatory circuitry affecting resistance towards Botrytis. Analysis of transgenic plants expressing WRKY33-HA under its native promoter post inoculation with spores of Botrytis cinerea 2100

2015-06-15 | E-GEOD-66289 | biostudies-arrayexpress

Botrytis cinerea genes activated in infection process

Project description:To screen Botrytis genes activated in infection process, we performed gene expression profiling analysis using data obtained from RNA-seq of Botrytis cinerea cultured in vitro or infecting Arabidopsis leaves.

2024-11-01 | GSE217021 | GEO

Temporal transcriptomic analysis of the Arabidopsis thaliana - Botrytis cinerea interaction

Project description:Transcriptional profiling of Arabidopsis leaves comparing mock-treated leaves with Botrytis cinerea infected leaves over a time-course (12 and 24 hrs).

2011-03-01 | GSE24445 | GEO

Transcription profiling of Physcomitrella patens response to Botrytis cinerea infection

Project description:Transcription profiling of Physcomitrella patens response to Botrytis cinerea infection

2014-04-15 | E-MTAB-919 | biostudies-arrayexpress

Next generation sequencing analysis of ginseng transcriptomes in response to Botrytis cinerea △BcSpd1 treatment

Project description:Next generation sequencing (NGS) was performed to identify genes changed in ginseng upon Botrytis cinerea △BcSpd1 treatment. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng defense induced by Botrytis cinerea △BcSpd1 .

2023-12-20 | GSE221931 | GEO

Botrytis cinerea

Project description:Botrytis cinerea genome resource

| PRJNA984325 | ENA

WRKY33 binding sites in Arabidopsis upon Botrytis cinerea 2100 inoculation

2015-06-15 | GSE66289 | GEO