Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Molossus molossus (Pallas's mastiff bat) genome sequencing, assembly and annotation

PROVIDER: PRJNA674390 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR11747789_1.fastq.gz	Fastqsanger.gz
	SRR11747789_2.fastq.gz	Fastqsanger.gz
	SRR11747790_1.fastq.gz	Fastqsanger.gz
	SRR11747790_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Molossus molossus isolate:mMolMol1

Project description:Molossus molossus (Pallas's mastiff bat) genome sequencing, assembly and annotation

| PRJNA628574 | ENA

Project description:Molossus alvarezi (Alvarez's mastiff bat) genome, mMolAlv2

| PRJNA1085220 | ENA

Molossus alvarezi isolate:mMolAlv2

Project description:Molossus alvarezi (Alvarez's mastiff bat) genome, mMolAlv2, haplotype 2

| PRJNA1080660 | ENA

Molossus alvarezi isolate:mMolAlv2

Project description:Molossus alvarezi (Alvarez's mastiff bat) genome, mMolAlv2, haplotype 1

| PRJNA1080661 | ENA

Project description:Molossus alvarezi (Alvarez's mastiff bat) genome, mMolAlv2, sequence data

| PRJNA1102396 | ENA

Project description:Molossus nigricans (northern black mastiff bat) genome, mMolNig1, sequence data

| PRJNA1120501 | ENA

Molossus nigricans isolate:mMolNig1

Project description:Molossus nigricans (northern black mastiff bat) genome, mMolNig1, haplotype 1

| PRJNA1093103 | ENA

Molossus nigricans isolate:mMolNig1

Project description:Molossus nigricans (northern black mastiff bat) genome, mMolNig1, haplotype 2

| PRJNA1093104 | ENA

Identification of the molecular basis of anti-cancer effect of Huaier.

Project description:Intervention type:DRUG. Intervention1:Huaier, Dose form:GRANULES, Route of administration:ORAL, intended dose regimen:20 to 60/day by either bulk or split for 3 months to extended term if necessary. Control intervention1:None. Primary outcome(s): For mRNA libraries, focus on mRNA studies. Data analysis includes sequencing data processing and basic sequencing data quality control, prediction of new transcripts, differential expression analysis of genes. Gene Ontology (GO) and the KEGG pathway database are used for annotation and enrichment analysis of up-regulated genes and down-regulated genes. For small RNA libraries, data analysis includes sequencing data process and sequencing data process QC, small RNA distribution across the genome, rRNA, tRNA, alignment with snRNA and snoRNA, construction of known miRNA expression pattern, prediction New miRNA and Study of their secondary structure Based on the expression pattern of miRNA, we perform not only GO / KEGG annotation and enrichment, but also different expression analysis.. Timepoint:RNA sequencing of 240 blood samples of 80 cases and its analysis, scheduled from June 30, 2022..

| 2612481 | ecrin-mdr-crc

Isolation and characterization of a novel gammaherpesvirus from a microbat cell line

Project description:While employing deep sequencing and de novo assembly to characterize the mRNA transcript profile of a cell line derived from the microbat Myotis velifer incautus, we serendipitously identified mRNAs encoding proteins with a high level of identity to herpesviruses. Next generation sequencing and de novo assembly of the viral genome from supernatants from Vero cells yielded a single contig of approximately 130 kilobases with at least 80 ORFs, predicted microRNAs and a gammaherpesvirus genomic organization. Phylogenetic analysis of the envelope glycoprotein (gB) and DNA polymerase (POLD1) revealed similarity to multiple gammaherpesvirus, including those from as yet uncultured viruses of the Rhadinovirus genus that were obtained by deep sequencing of bat tissues. Cumulatively, this study provides the first isolation and characterization of a replication competent bat gammaherpesvirus.

2016-02-01 | GSE76756 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data