Tropical tuna bacteriome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA674773 | ENA |
REPOSITORIES: ENA
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Project description:Estimating the abundance of pelagic fish species is a challenging task, due to their vast and remote habitat. Despite the development of satellite, archival and acoustic tagging techniques that allow the tracking of marine animals in their natural environments, these technologies have so far been underutilized in developing abundance estimations. We developed a new method for estimating the abundance of tropical tuna that employs these technologies and exploits the aggregative behavior of tuna around floating objects (FADs). We provided estimates of abundance indices based on a simulated set of tagged fish and studied the sensitivity of our method to different association dynamics, FAD numbers, population sizes and heterogeneities of the FAD-array. Taking the case study of yellowfin tuna (Thunnus albacares) acoustically-tagged in Hawaii, we implemented our approach on field data and derived for the first time the ratio between the associated and the total population. With more extensive and long-term monitoring of FAD-associated tunas and good estimates of the numbers of fish at FADs, our method could provide fisheries-independent estimates of populations of tropical tuna. The same approach can be applied to obtain population assessments for any marine and terrestrial species that display associative behavior and from which behavioral data have been acquired using acoustic, archival or satellite tags.
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Project description:There is broad evidence of climate change causing shifts in fish distribution worldwide, but less is known about the response of fisheries to these changes. Responses to climate-driven shifts in a fishery may be constrained by existing management or institutional arrangements and technological settings. In order to understand how fisheries are responding to ocean warming, we investigate purse seine fleets targeting tropical tunas in the east Atlantic Ocean using effort and sea surface temperature anomaly (SSTA) data from 1991 to 2017. An analysis of the spatial change in effort using a centre of gravity approach and empirical orthogonal functions is used to assess the spatiotemporal changes in effort anomalies and investigate links to SSTA. Both analyses indicate that effort shifts southward from the equator, while no clear pattern is seen northward from the equator. Random forest models show that while technology and institutional settings better explain total effort, SSTA is playing a role when explaining the spatiotemporal changes of effort, together with management and international agreements. These results show the potential of management to minimize the impacts of climate change on fisheries activity. Our results provide guidance for improved understanding about how climate, management and governance interact in tropical tuna fisheries, with methods that are replicable and transferable. Future actions should take into account all these elements in order to plan successful adaptation.
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Project description:Spatial closures are widely used in marine conservation and fisheries management and it is important to understand their contribution to achieving management objectives. Many previous evaluations of closed area effects have used before-after comparisons, which, without controlling for a full range of factors, cannot ascribe changes in fleet behaviour to area closures per se. In this study we used a counterfactual approach to disentangle the effect of two closed areas on fishing location from other competing effects on the behaviour of the Indian Ocean tuna purse seine fishery. Our results revealed an inconsistent effect of the one of the closed areas between years, after taking into account the influence of environmental conditions on fleet behaviour. This suggests that the policy of closing the area per se was not the main driver for the fleet allocating its effort elsewhere. We also showed a marked difference in effect between the two closed areas resulting from their different locations in the fishery area. These findings highlight the need to account for other key fleet behavioural drivers when predicting or evaluating the contribution of area closures to achieving conservation and fishery management objectives.
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Project description:Here we show the bacteriome of wasted chewing gums from five different countries and the microbial successions on wasted gums during three months of outdoors exposure. In addition, a collection of bacterial strains from wasted gums was set, and the biodegradation capability of different gum ingredients by the isolates was tested. Our results reveal that the oral microbiota present in gums after being chewed, characterised by the presence of species such as Streptococcus spp. or Corynebacterium spp., evolves in a few weeks to an environmental bacteriome characterised by the presence of Acinetobacter spp., Sphingomonas spp. and Pseudomonas spp. Wasted chewing gums collected worldwide contain a typical sub-aerial biofilm bacteriome, characterised by species such as Sphingomonas spp., Kocuria spp., Deinococcus spp. and Blastococcus spp. Our findings have implications for a wide range of disciplines, including forensics, contagious disease control, or bioremediation of wasted chewing gum residues.
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