Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Ipomoea pes-caprae gene expression analysis under salt stress

PROVIDER: PRJNA675973 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13367018_1.fastq.gz	Fastqsanger.gz
	SRR13367018_2.fastq.gz	Fastqsanger.gz
	SRR13367019_1.fastq.gz	Fastqsanger.gz
	SRR13367019_2.fastq.gz	Fastqsanger.gz
	SRR13367020_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Ipomoea pes-caprae

Project description:Ipomoea pes-caprae Transcriptome

| PRJNA656933 | ENA

Ipomoea pes-caprae

Project description:Ipomoea pes-caprae overview

| PRJNA806258 | ENA

Ipomoea pes-caprae

Project description:Unveiling the genomic blueprint of salt stress: insights from Ipomoea pes-caprae L

| PRJNA1049998 | ENA

Project description:Genome sequence of Ipomoea pes-caprae

| PRJNA835742 | ENA

Project description:Ipomoea aquatica gene expression analysis under salt stress

| PRJNA673661 | ENA

Project description:De novo transcriptome assembly of Ipomoea pes-caprae L.

| PRJNA656146 | ENA

Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (ChIP-seq dataset)

Project description:Soybean is an important economic crop for human diet, animal feeds and biodiesel due to high protein and oil content. Its productivity is significantly hampered by salt stress, which impairs plant growth and development by affecting gene expression, in part, through epigenetic modification of chromatin status. However, little is known about epigenetic regulation of stress response in soybean roots. Here, we used RNA-seq and ChIP-seq technologies to study the dynamics of genome-wide transcription and histone methylation patterns in soybean roots under salt stress. 8798 soybean genes changed their expression under salt stress treatment. Whole-genome ChIP-seq study of an epigenetic repressive mark, histone H3 lysine 27 trimethylation (H3K27me3), revealed the changes in H3K27me3 deposition during the response to salt stress. Unexpectedly, we found that most of the inactivation of genes under salt stress is strongly correlated with the de novo establishment of H3K27me3 in various parts of the promoter or coding regions where there is no H3K27me3 in control plants. In addition, the soybean histone modifiers were identified which may contribute to de novo histone methylation and gene silencing under salt stress. Thus, dynamic chromatin regulation, switch between active and inactive modes, occur at target loci in order to respond to salt stress in soybean. Our analysis demonstrates histone methylation modifications are correlated with the activation or inactivation of salt-inducible genes in soybean roots.

2019-07-22 | GSE133573 | GEO

The rsa3-1 mutation affects global gene expression in Arabidopsis thaliana under salt stress.

Project description:Salt stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified an essential regulator of salt stress RSA3 and used the Affymetrix whole-genome arrays to study the effect of rsa3-1 mutation on global gene expression under salt stress. A set of genes differentially expressed in rsa3-1 under salt stress are identified.

2013-04-20 | GSE41626 | GEO

Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

Project description:Analysis of root gene expression of salt-tolerant genotypes FL478, Pokkali and IR63731, and salt-sensitive genotype IR29 under control and salinity-stressed conditions during vegetative growth. Results provide insight into the genetic basis of salt tolerance in indica rice. Keywords: stress response

2009-07-16 | GSE14403 | GEO

Project description:DNA sequencing data of Oxalis pes-caprae L.

| PRJNA764556 | ENA