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Lacticaseibacillus casei BL23

ABSTRACT: sRNA sequencing of Lactobacillus casei BL23

PROVIDER: PRJNA678647 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR13071200_1.fastq.gz	Fastqsanger.gz
	SRR13071200_2.fastq.gz	Fastqsanger.gz
	SRR13071201_1.fastq.gz	Fastqsanger.gz
	SRR13071201_2.fastq.gz	Fastqsanger.gz
	SRR13071202_1.fastq.gz	Fastqsanger.gz

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Response to bile of Lactobacillus casei BL23

Project description:The response to bile of Lactobacillus casei BL23 was investigated.

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Project description:In the present study we characterized the sRNA profile of Lactobacillus casei BL23 using conventional and mDOT-seq approaches. In total 307 potential sRNAs were identified, 28 of which were validated by Northern hybridization. As a major portion of predicted sRNAs were shown to be conserved among the related species of Lactobacillus casei group (LCG), the results obtained in this study could serve as a valuable resource for achieving a better understanding of LCG physiology or even improving their applications in industry and medicine.

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Response to bile of Lactobacillus casei BL23

Project description:The response to bile of Lactobacillus casei BL23 was investigated. Lactobacillus casei BL23 was grown in MRS medium at 37C without shaking until O.D. 595 nm. reached 0.5. The cultures were then two fold diluted with prewarmed MRS medium (control) or MRS supplemented with 0.2% bovine bile (treatment) and incubation continued for 45 min. Cells were then harvested and total RNA purified.

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Comparison of the response to bile of Lactobacillus casei BL23 and its derivative strain TC01

Project description:The response to bile of Lactobacillus casei BL23 and its derivative strain TC01 was investigated. TC01 strain carries a complete deletion of gene LCABL_02080 which encodes a two component signal transduction response regulator. Lactobacillus casei BL23 and TC01 strains were grown in MRS medium at 37C without shaking until O.D. 595 nm. reached 0.5. The cultures were then two fold diluted with prewarmed MRS medium (control) or MRS supplemented with 0.2% bovine bile (treatment) and incubation continued for 45 min. Cells were then harvested and total RNA purified.

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Project description:Comparison of the response to bile of Lactobacillus casei BL23 and its derivative strain TC01

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