Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Restriction site-associated DNA sequencing (RAD-seq) of Pelodiscus sinensis

PROVIDER: PRJNA680995 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13154140_1.fastq.gz	Fastqsanger.gz
	SRR13154140_2.fastq.gz	Fastqsanger.gz
	SRR13154141_1.fastq.gz	Fastqsanger.gz
	SRR13154141_2.fastq.gz	Fastqsanger.gz
	SRR13154142_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:Stewartia sinensis restriction site-associated DNA sequencing

| PRJNA494473 | ENA

Project description:Hartia sinensis restriction site-associated DNA sequencing

| PRJNA494283 | ENA

RAD methods paper - Threespine Stickleback Lateral Plate Mapping

Project description:Restriction site Associated DNA (RAD) tags are a genome-wide representation of every site of a particular restriction enzyme by short DNA tags. Most organisms segregate large numbers of DNA sequence polymorphisms that disrupt restriction sites, which allow RAD tags to serve as genetic markers spread at a high-density throughout the genome. Here, we demonstrate the applicability of RAD markers for both individual and bulk-segregant genotyping. First, we show that these markers can be identified and typed on pre-existing microarray formats. Second, we present a method that uses RAD marker DNA to rapidly produce a low-cost microarray genotyping resource that can be used to efficiently identify and type thousands of RAD markers. We demonstrate the utility of the former approach by using a tiling path array for the fruit fly to map a recombination breakpoint, and the latter approach by creating and utilizing an enriched RAD marker array for the threespine stickleback. The high number of RAD markers enabled localization of a previously identified region, as well as a second novel region also associated with the lateral plate phenotype. Taken together, our results demonstrate that RAD markers, and the method to develop a RAD marker microarray resource, allow high-throughput, high-resolution genotyping in both model and non-model systems. Keywords: microarray genotyping

2007-01-24 | GSE5773 | GEO

Syngnathus schlegeli

Project description:Restriction site-associated DNA (RAD) sequencing of Syngnathus schlegeli

| PRJNA490603 | ENA

Camellia sinensis

Project description:Restriction-site associated DNA sequencing of camellia sinensis

| PRJNA1057196 | ENA

Project description:Restriction site-associated DNA sequencing (RAD-seq) of four populations of Mauremys reevesii and M. sinensis

| PRJNA649222 | ENA

Project description:The restriction site-associated DNA sequencing (RAD-seq) of Amorphophallus albus germplasms

| PRJNA715021 | ENA

Gasterosteus aculeatus aculeatus

Project description:Marine stickleback fish Restriction-site associated DNA (RAD) sequencing (Sbf1)

| PRJNA237034 | ENA

Drosophila serrata

Project description:Pooled restriction-site associated DNA (RAD) tag sequencing following selection

| PRJNA263746 | ENA

Project description:Restriction-site associated DNA sequencing data of Hartia sinensis

| PRJNA523957 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data