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ABSTRACT: Baseline bacterioplanktonic communities of the Faroe-Shetland Channel

PROVIDER: PRJNA682843 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13205314_1.fastq.gz	Fastqsanger.gz
	SRR13205314_2.fastq.gz	Fastqsanger.gz
	SRR13205315_1.fastq.gz	Fastqsanger.gz
	SRR13205315_2.fastq.gz	Fastqsanger.gz
	SRR13205316_1.fastq.gz	Fastqsanger.gz

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Association analysis of invasive urinary carcinoma in the Shetland sheepdogs and related breeds.

Project description:Naturally occurring canine invasive urinary carcinoma (iUC) closely resembles human muscle invasive bladder cancer in terms of histopathology, metastases, response to therapy and, low survival rate. The heterogeneous nature of the disease has led to the association of large numbers of risk loci in humans, however most are of small effect. There exists a need for new and accurate animal models of invasive bladder cancer. In dogs, distinct breeds show markedly different rates of iUC, thus presenting an opportunity to identify additional risk factors and overcome the locus heterogeneity encountered in human mapping studies. In the association study presented here, inclusive of 100 Shetland sheepdogs and 58 dogs of other breeds, we identify a homozygous protein altering point mutation within the NIPAL1 gene which increases risk by eight-fold (OR=8.42, CI=3.12-22.71), accounting for nearly 30% of iUC risk in the Shetland sheepdog. Inclusion of six additional loci accounts for the majority of disease risk in the breed and explains nearly 75% of the phenotypes in this study. When combined with sequence data from tumors, we show that variation in the MAPK signaling pathway is an overarching cause of iUC susceptibility in dogs.

2023-08-28 | GSE241367 | GEO

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