Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bufo bufo

ABSTRACT: ddRADseq pool of 120 B. bufo individuals sequenced on a Illumina Novaseq 6000. Raw sequence reads

PROVIDER: PRJNA683871 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13239575_1.fastq.gz	Fastqsanger.gz
	SRR13239575_2.fastq.gz	Fastqsanger.gz
	SRR13239576_1.fastq.gz	Fastqsanger.gz
	SRR13239576_2.fastq.gz	Fastqsanger.gz
	SRR13239577_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Bufo bufo

Project description:Bufo bufo overview

| PRJNA693960 | ENA

Bufo bufo

Project description:Transcriptome of common toad, Bufo bufo

| PRJNA769252 | ENA

Single cell transcriptome profiling of the human alcohol-dependent brain samples.

Project description:Over 16,000 nuclei were isolated from human postmartum brain frozen prefrontal cortex samples of alcoholic and control individuals. Libraries were prepared with 10X Genomics platform and sequenced using NovaSeq 6000.

2020-04-14 | GSE141552 | GEO

Bufo gargarizans

Project description:Bufo gargarizans overview

| PRJNA258481 | ENA

Bufo gargarizans

Project description:Bufo gargarizans transplant

| PRJNA383934 | ENA

Single-cell transcriptomics reveal a unique memory-like NK cell subset that accumulates with aging and correlates with disease severity in COVID-19

Project description:For the scRNA-seq analysis of human blood lymphocytes and NK cells, lymphocytes were sorted as CD45+ cells, and NK cells were sorted as CD3/CD19/CD20/CD14−CD7+ cells using FACS (SONY SH800S); the purity was above 95%. The cells from 4 elderly individuals were pooled in one tube and the cells from 4 young individuals were pooled in another tube. We then counted and resuspended the pooled cells at a concentration of 1000 cells/μL, aiming for an estimated 6000 cells per library, following the instructions of the single-cell 3ʹ solution v3 reagent kit (10X Genomics). Single-cell libraries were constructed strictly according to the manufacturer’s standard protocols. Each sequencing library was generated with a unique sample index. Libraries were sequenced on the Illumina NovaSeq 6000 system.

2022-03-25 | GSE199337 | GEO

Bufo gargarizans

Project description:Bufo gargarizans Raw sequence reads

| PRJNA853591 | ENA

Bufo gargarizans

Project description:Bufo gargarizans Raw sequence reads

| PRJNA378697 | ENA

RNA-seq of knock-out mutants of Candida parapsilosis CLIB 214 (CBS 604)

Project description:This study compares gene expression in three strains (CPL2H1, CPL2H1 gtf1/gtf1 and CPL2H1 otf1/otf1) with the genetic background of Candida parapsilosis CLIB 214 (CBS 604). Total RNA was isolated using hot acid phenol extraction. A TruSeq stranded mRNA library was sequenced on an Illumina NovaSeq 6000 system.

2021-10-02 | E-MTAB-9442 | biostudies-arrayexpress

Interleukin-10/CSF1R fusion protein rejuvenates the exhausted T cells for executing antitumor activity

Project description:Single cell sequence (SC-seq) has been used to explore the effect of IL10/CSF1R fusion protein modulation in tumor microenvironment. Four groups were analyzed which contain Ctrl, CSF1R, IL10 and BF10. MTC-Q1 oral cancer cells were orthotopic injection in C57BL/6 mice. CD45+ immune cells has been isolated, analyzed and sequenced by dropped based scRNA-seq, cDNA were sequenced by Illumina Novaseq 6000.

2023-07-09 | GSE190111 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data