Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sulfobacillus acidophilus TPY

ABSTRACT: Complete Genome Analysis of Sulfobacillus acidophilus strain TPY

PROVIDER: PRJNA68423 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1823057_1.fastq.gz	Fastqsanger.gz
	SRR1823057_2.fastq.gz	Fastqsanger.gz
	GCA_000219855.1_sequence_report.txt	Txt

Items per page:

1 - 3 of 3

Similar Datasets

Sulfobacillus acidophilus DSM 10332

Project description:Sulfobacillus acidophilus DSM 10332 Genome sequencing

| PRJNA40777 | ENA

Influence of environmental conditions and AI2 on the adhesion adaptive response of Lactobacillus acidophilus NCFM

Project description:This study reports an over 20-fold increase in the adhesive ability of Lactobacillus acidophilus NCFM to Caco-2 cells following a 1 hour incubation of cells that were concentrated ten-fold, immediately prior to adhesion. Microarray analysis of the global transcriptional response with and without exposure to the adhesion adaptive conditions revealed several genes potentially involved with adhesion to the intestinal epithelial cells and a classic stress response. Interestingly, putative genes linked to the synthesis of an interspecies signaling molecule, autoinducer-2 (AI-2), were overexpressed. Examination of the L. acidophilus NCFM genome revealed the complete pathway for AI-2 synthesis. AI-2 activity was detected in L. acidophilus NCFM during stationary growth phase using the Vibrio harveyi BB170 assay system. Using site-specific integration, an isogenic mutation was created in luxS and the resulting derivative of L. acidophilus NCFM did not produce AI-2. A 58 % decrease in adherence to Caco-2 cells was also observed by the LuxS- mutant when the cells were used for adhesion directly from logarithmic phase cultures. However, the LuxS- mutant strain still responded to adhesion adaptive conditions with significantly increased adherence indicating that additional factors contribute to the amplified adhesion response. Keywords: Culture response to specific environmental conditions

2010-02-09 | GSE5674 | GEO

Sulfobacillus

Project description:Sulfobacillus sp. overview

| PRJNA628008 | ENA

Sulfobacillus thermotolerans

Project description:Sulfobacillus thermotolerans overview

| PRJNA188045 | ENA

Lactobacillus acidophilus and Helicobacter pylori stimulation of bone marrow derived macrophage

Project description:Helicobacter pylori causes chronic gastritis and avoids elimination by the immune system of the infected host. The commensal bacterium Lactobacillus acidophilus has been reported to exert beneficial effects as a supplement during H. pylori eradication therapy. In the present study, we applied whole genome microarray analysis to compare the immune response induced in murine bone marrow derived macrophages (BMDM) stimulated with L. acidophilus, H. pylori, or with both bacteria in combination Microarray expression profiling was performed to analyze stimulation of bone marrow derived macrophages with Helicobacter pylori 251, Lactobacillus acidophilus NCFM or Lactobacillus acidophilus NCFM co-stimulated with Helicobacter pylori 251 were analyzed 5 hours after infection.

2013-07-02 | E-GEOD-42622 | biostudies-arrayexpress

Comparative gene expression study of Lactobacillus acidophilus NCFM and upp mutant (NCK1909)

Project description:A L. acidophilus NCFM mutant (NCK1909) carrying an in-frame deletion within the upp gene (LBA0770) was constructed as a background host for a newly developed upp-based counterselectable gene replacement system for L. acidophilus. Since the NCK1909 mutant serves both as the host for genetic exchange and the reference strain for subsequent phenotypic studies of deletion mutants that will be generated from the counterselective gene replacement system, comparative gene expression study was performed to ensure the genotype of NCK1909 is representative of the NCFM parent strain.

2009-03-24 | GSE14622 | GEO

Sulfobacillus thermotolerans strain:Kr1

Project description:Sulfobacillus thermotolerans strain:Kr1 Genome sequencing and assembly

| PRJNA362996 | ENA

Lactobacillus acidophilus and Helicobacter pylori stimulation of bone marrow derived macrophage

2013-07-02 | GSE42622 | GEO

Transcriptional analysis of prebiotic uptake and catabolism by Lactobacillus acidophilus NCFM

Project description:The global transcriptome of the wild type Lactobacillus acidophilus NCFM strain (NCK56) was measured during exponential growth on 11 prebiotic carbohydrates and glucose to identify the specific gene cluster differentially upregulated in response to each carbohydrate.

2012-12-20 | GSE35968 | GEO

Lactobacillus acidophilus strain:YT1

Project description:Complete genome seuqnece of Lactobacillus acidophilus YT1

| PRJNA421407 | ENA