Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Integrated Metabolome and Transcriptome Analyses Reveal the Molecular Mechanism of a Color Mutation in Miniature Roses

PROVIDER: PRJNA684357 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13260157_1.fastq.gz	Fastqsanger.gz
	SRR13260157_2.fastq.gz	Fastqsanger.gz
	SRR13260158_1.fastq.gz	Fastqsanger.gz
	SRR13260158_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Project description:Integrated transcriptomic and metabolomics analysis reveal the molecular mechanism of flower color differentiation of Orychophragmus violaceus

| PRJNA1136702 | ENA

Transcriptomic analysis of Medicago truncatula leaf after Asian soybean rust infection

Project description:To investigate the molecular mechanism of nonhost resistance of M. truncatula against soybean rust, we performed integrated tanscriptome and metabolome analyses using samples derived from M. truncatula leaves inoculated with soybean rust. To identify host signaling pathways triggered by soybean rust infection, we carried out microarray analysis to monitor the expression profiles associated with nonhost resistance including pre-invasive (12 hai) and apoplastic defense (24 hai) using Affymetrix GeneChip® Medicago Genome Array (Affymetrix).

2015-08-18 | E-MTAB-2911 | biostudies-arrayexpress

Project description:Integrative metabolome and transcriptome analyses reveal the molecular mechanism of thermal stress response in tobacco leaves

| PRJNA855915 | ENA

Project description:Integrated transcriptome and metabolome profiling of Camellia reticulata reveal mechanisms of flower color differentiation

| PRJNA880364 | ENA

Gene expression profile of miniature pig as animal model for toxicity evaluation by using mRNA expression profiling.

Project description:Miniature pig is a useful animal model to clarify the vital reaction and the molecular mechanisms. However, physiclogical response of pig model to sodium azide (AZIDE) stress is not reveal. To establishment of large animal model for evaluate toxic stress, whole blood of miniature pig were assessed with genomics. 7 month old clawn miniature pigs were fed AZIDE feeding. AZIDE dose of 300Âµg/kg, one hundredth of LD50 was given orally to the miniature pigs. Whole blood gene expression was measured at 0h, 6h and 24h after feeding.

2016-03-02 | E-GEOD-78769 | biostudies-arrayexpress

Gene expression profile of miniature pig as animal model for toxicity evaluation by using mRNA expression profiling.

2016-03-02 | GSE78769 | GEO

Project description:Gene regulation network analyses reveal molecular mechanism of pistil development in papaya

| PRJNA687615 | ENA

RNA expression data of inner ear tissues in SOX10 p.R109W mutation pigs with inner ear malformation and wild-type pigs

Project description:SOX10 (SRY-box 10) mutation may lead to inner ear deformities. However, its molecular mechanisms on inner ear development are not clear. In this work. The inner ear morphology was investigated at different embryonic stages of the SOX10 mutation miniature porcine model with sensorineural hearing loss, and high-throughput RNA-seq and bioinformatics analyses were applied. Our results indicated that the SOX10 mutation in the miniature pigs led to an incomplete partition of the cochlea, a cystic apex caused by fusion from middle and apical turns, cochlear modiolar defects and a shortened cochlear duct. The model demonstrated 173 DEGs and 185 lncRNAs. The down-regulated DEGs most significantly enriched the inflammatory mediator regulation of the TRP channels, arachidonic acid metabolism, and the salivary secretion pathways, while the up-regulated DEGs most significantly enriched the systemic lupus erythematosus and alcoholism pathways. Based on gene cluster analysis, we selected four gene groups: WNT1, KCNQ4, STRC and PAX6.

2018-06-21 | GSE110103 | GEO

Project description:Compare profiles of roses with flower color variation

| PRJNA725063 | ENA

Bougainvillea buttiana

Project description:Integrated metabolome full-length sequencing and transcriptome analyses unveil the molecular mechanisms of the canary yellow and red bract color formation of Bougainvillea buttiana Chitra

| PRJNA933969 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data