Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

PROVIDER: PRJNA684442 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13241100_1.fastq.gz	Fastqsanger.gz
	SRR13241100_2.fastq.gz	Fastqsanger.gz
	SRR13241101_1.fastq.gz	Fastqsanger.gz
	SRR13241101_2.fastq.gz	Fastqsanger.gz
	SRR13241102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 156

Similar Datasets

Project description:Phylogenomics and diversification of Schistosomatidae using targeted sequence capture of ultra-conserved elements

| PRJNA843978 | ENA

Mutation Mapping of 40 Streptococcus suis strains

Project description:Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

2014-05-20 | GSE40035 | GEO

Targeted RNA sequencing for gene discovery and quantification

Project description:Due to the large size, complex splicing and wide dynamic range of eukaryotic transcriptomes, RNA sequencing samples the majority of expressed genes infrequently, resulting in sparse sequencing coverage that can hinder robust isoform assembly and quantification. Targeted RNA sequencing addresses this challenge by using oligonucleotide probes to capture selected genes or regions of interest for focused sequencing. This enhanced sequencing coverage confers sensitive gene discovery, robust transcript assembly and accurate gene quantification. Here we describe a detailed protocol for all stages of targeted RNA sequencing, from initial probe design considerations, capture of targeted genes, to final assembly and quantification of captured transcripts. Initial probe design and final analysis can take less than a day, while the central experimental capture stage requires ~7 days.

2014-03-01 | GSE52503 | GEO

Project description:Nuclear Phylogenetics of Funariaceae using Target Capture

| PRJNA674709 | ENA

Project description:Nuclear phylogenomics of Dioscorea yams

| PRJNA530017 | ENA

Project description:Targeted sequence capture of nuclear loci in genus Buddleja

| PRJNA419999 | ENA

Project description:Peltigerales target capture phylogenomics

| PRJNA683907 | ENA

Targeted RNA sequencing for gene discovery and quantification

2014-03-01 | E-GEOD-52503 | biostudies-arrayexpress

NepenthesPhylogenomics

Project description:Target-capture based phylogenomics of Nepenthes using Angiosperm-353 bait kit

| PRJEB35235 | ENA

High-resolution DNase-seq profiles of targeted loci in mES-derived primitive ectoderm

Project description:The aim of this experiment was to profile DNase-I accessibility at a subset of genomic regions in extremely high coverage. After DNase-I treatment, DNA fragments from specific loci were targeted using bead capture, amplified, and sequenced.

2015-04-11 | E-MTAB-3497 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data