Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: the microbial communities on two big volcanic islands in Beibu Gulf, China.

PROVIDER: PRJNA684667 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13245134_1.fastq.gz	Fastqsanger.gz
	SRR13245134_2.fastq.gz	Fastqsanger.gz
	SRR13245135_1.fastq.gz	Fastqsanger.gz
	SRR13245135_2.fastq.gz	Fastqsanger.gz
	SRR13245136_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

The microbial functional structure along the latitudinal gradient from the north to the south in China mainland as characterized by GeoChip

Project description:Understanding and quantifying the effects of environmental factors influencing the variation of abundance and diversity of microbial communities was a key theme of ecology. For microbial communities, there were two factors proposed in explaining the variation in current theory, which were contemporary environmental heterogeneity and historical events. Here, we report a study to profile soil microbial structure, which infers functional roles of microbial communities, along the latitudinal gradient from the north to the south in China mainland, aiming to explore potential microbial responses to external condition, especially for global climate changes via a strategy of space-for-time substitution. Using a microarray-based metagenomics tool named GeoChip 5.0, we showed that microbial communities were distinct for most but not all of the sites. Using substantial statistical analyses, exploring the dominant factor in influencing the soil microbial communities along the latitudinal gradient. Substantial variations were apparent in nutrient cycling genes, but they were in line with the functional roles of these genes. 300 samples were collected from 30 sites along the latitudinal gradient, with 10 replicates in every site

2015-05-23 | E-GEOD-69171 | biostudies-arrayexpress

The microbial functional structure along the latitudinal gradient from the north to the south in China mainland as characterized by GeoChip

2015-05-23 | GSE69171 | GEO

Project description:Beibu Gulf survey

| PRJNA1109585 | ENA

Project description:Intestinal Tract Microbe Communities Associated with Horseshoe Crabs from Beibu Gulf, China

| PRJNA642685 | ENA

Project description:Intestinal Tract Microbe Communities Associated with Horseshoe Crabs from Beibu Gulf, China

| PRJNA642919 | ENA

Project description:Metagenomic in Beibu Gulf

| PRJNA854303 | ENA

Project description:Intestinal microorganisms of five shellfish species in the Beibu Gulf, China

| PRJNA734603 | ENA

A transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.

Project description:We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph and two non-methanotrophic methylotrophs.

2016-12-26 | GSE85736 | GEO

Project description:Metagenomic analysis of four mangrove reserves in Beibu Gulf, Guangxi province, China

| PRJNA687146 | ENA

Urban waterways microbial communities (Affymetrix)

Project description:The increased urban pressures are often associated with specialization of microbial communities. Microbial communities being a critical player in the geochemical processes, makes it important to identify key environmental parameters that influence the community structure and its function.In this proect we study the influence of land use type and environmental parameters on the structure and function of microbial communities. The present study was conducted in an urban catchment, where the metal and pollutants levels are under allowable limits. The overall goal of this study is to understand the role of engineered physicochemical environment on the structure and function of microbial communities in urban storm-water canals. Microbial community structure was determined using PhyoChio (G3) Water and sediment samples were collected after a rain event from Sungei Ulu Pandan watershed of >25km2, which has two major land use types: Residential and industrial. Samples were analyzed for physicochemical variables and microbial community structure and composition. Microbial community structure was determined using PhyoChio (G3)

2014-12-22 | E-GEOD-64368 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data