Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Small non-coding RNA organ expression atlas

ABSTRACT: Small non-coding RNA organ expression atlas

PROVIDER: PRJNA686442 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13274600.fastq.gz	Fastqsanger.gz
	SRR13274700.fastq.gz	Fastqsanger.gz
	SRR13274800.fastq.gz	Fastqsanger.gz
	SRR13274601.fastq.gz	Fastqsanger.gz
	SRR13274701.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 246

Similar Datasets

A mouse tissue atlas of small non-coding RNA

Project description:A mouse tissue atlas of small non-coding RNA

| PRJNA489873 | ENA

An atlas of small non-coding RNAs in Human Preimplantation Development [Small-Seq]

Project description:An atlas of small non-coding RNAs in Human Preimplantation Development [Small-Seq]

| PRJNA1050220 | ENA

An atlas of small non-coding RNAs in Human Preimplantation Development

Project description:An atlas of small non-coding RNAs in Human Preimplantation Development

| PRJNA1050210 | ENA

Small non-coding RNA organ expression atlas

Project description:We sequenced 188 tissue samples comprising 35 organ types retrieved from six humans. To demonstrate evolutionary conservation we sequenced in addition 58 samples from 6 tissues of mice.

2021-12-19 | GSE163534 | GEO

An atlas of small non-coding RNAs in Human Preimplantation Development [RNA-seq]

Project description:An atlas of small non-coding RNAs in Human Preimplantation Development [RNA-seq]

| PRJNA1049378 | ENA

An atlas of small non-coding RNAs in Human Preimplantation Development (Mouse embryo RNA-seq)

Project description:An atlas of small non-coding RNAs in Human Preimplantation Development (Mouse embryo RNA-seq)

| PRJNA1138744 | ENA

The RNA Atlas expands the catalog of human non-coding RNAs

Project description:The human transcriptome consists of various RNA biotypes including multiple types of non-coding RNAs (ncRNAs). Current ncRNA compendia remain incomplete partially because they are almost exclusively derived from the interrogation of small- and polyadenylated RNAs. Here, we present a more comprehensive atlas of the human transcriptome that is derived from matching polyA-, total-, and small-RNA profiles of a heterogenous collection of nearly 300 human tissues and cell lines. We report thousands of novel RNA species across all major RNA biotypes, including a hitherto poorly-cataloged class of non-polyadenylated single-exon long non-coding RNAs. In addition, we exploit intron abundance estimates from total RNA-sequencing to predict the regulatory potential of various non-coding RNAs. Our study represents a substantial expansion of the current catalogue of human ncRNAs and their regulatory interactions. All data and results are accessible through the R2 webtool and serve as a basis to further explore RNA biology and function.

2021-04-15 | GSE138734 | GEO

A microRNA expression atlas of grapevine based on small RNA library sequencing

Project description:Genetic and epigenetic regulations, mostly driven by small non-coding RNAs, play a crucial role to define genetic programming in plant biology and development. In this work, we focus on miRNAs, the most representative class of small RNAs, to present the first comprehensive miRNA expression atlas in Vitis vinifera L. Our atlas gives a clear picture of miRNA regulation and homeostasis in the whole plant during its lifecycle. We analyzed 68 small RNA libraries, which were prepared from a rich and diverse number of tissues (13) harvested on different developmental stages. We identified 110 known miRNAs and annotated 176 novel, some of which belonging to known families and others completely new. We found that very few miRNAs may be defined as tissue specific. However, interestingly, in the stamen 22 miRNAs were found highly specific. Most of the identified miRNAs show low expression levels, whereas, 32 miRNAs are present in all tissues and mainly highly expressed. Additionally, in each organ, the different developmental stages share 30—70% of miRNAs and their modulation leads the regulation of plant development. We also present a target prediction analysis and suggest a first functional description of hundreds of miRNAs. Our findings represent the most complete expression atlas for grapevine and any other woody species, paving the ground for future functional studies. Genome-wide small RNA profiling was done by Illumina TruSeq sample preparation and Illumina Small RNA Sample Prep kit followed by high-throughput sequencing with Illumina HiSeq 2000 and GA IIx Illumina Sequencer platforms for 13 different organs/tissues of grapevine in different developmental stages, with two replicates each, comprising a total of 70 samples

2015-05-01 | E-GEOD-59802 | biostudies-arrayexpress

A landscape of mouse mitochondrial small non-coding RNAs

Project description:A landscape of mouse mitochondrial small non-coding RNAs

| PRJEB61863 | ENA

The small non-coding RNA landscape of prostate epithelium

Project description:The small non-coding RNA landscape of prostate epithelium

| PRJNA512612 | ENA