Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome[Taxonomy ID: 410658]

ABSTRACT: Rhizosphere microbial community investigation

PROVIDER: PRJNA687637 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13413513_1.fastq.gz	Fastqsanger.gz
	SRR13413513_2.fastq.gz	Fastqsanger.gz
	SRR13413514_1.fastq.gz	Fastqsanger.gz
	SRR13413514_2.fastq.gz	Fastqsanger.gz
	SRR13413515_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Soil metagenome [Taxonomy ID: 410658]

Project description:Changes in the soil microbial community structure along a pedogenic gradient

| PRJNA414389 | ENA

soil metagenome [Taxonomy ID: 410658]

Project description:Impact on soil bacterial community of opine producing transgenic lines

| PRJNA613299 | ENA

soil metagenome [Taxonomy ID: 410658]

Project description:The effect of restriction of plant photosynthetic carbon flow to the soil fungal and bacterial community in boreal forest humus

| PRJNA454770 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-09-12 | GSE61338 | GEO

soil metagenome [Taxonomy ID: 410658]

Project description:Post-wildfire patterns of bacterial communities and functions in the permafrost

| PRJNA564464 | ENA

soil metagenome [Taxonomy ID: 410658]

Project description:metagenomic sequencing raw reads of Panax notoginseng soil Raw sequence reads

| PRJNA559079 | ENA

soil metagenome [Taxonomy ID: 410658]

Project description:Post-wildfire patterns of bacterial communities and functions in the permafrost

| PRJNA514982 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method. Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.

2014-09-12 | E-GEOD-61338 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-12-10 | E-MTAB-2920 | biostudies-arrayexpress

Invasive mechanisms for exotic Ageratina adenophora to customize soil microbe

Project description:Understanding the mechanisms underlying the establishment of invasive plants is critical in community ecology. According to a widely accepted theory, plant-soil-microbe interactions mediate the effects of invasive plants on native species, thereby affecting invasion success. However, the roles and molecular mechanisms associated with such microbes remain elusive. Using high throughput sequencing and a functional gene microarray, we found that soil taxonomic and functional microbial communities in plots dominated by Ageratina adenophora developed to benefit the invasive plant. There were increases in nitrogen-fixing bacteria and labile carbon degraders, as well as soil-borne pathogens in bulk soil, which potentially suppressed native plant growth. Meanwhile, there was an increase of microbial antagonism in the A. adenophora rhizosphere, which could inhibit pathogenicity against plant invader. These results suggest that the invasive plant A. adenophora establishes a self-reinforcing soil environment by changing the soil microbial community. It could be defined as a ‘bodyguard/mercenary army’ strategy for invasive plants, which has important insights for the mitigation of plant invasion.

2019-05-01 | GSE114498 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data