Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil 16S amplicon sequences

ABSTRACT: Soil microbiome dynamics after fertilization with organic versus mineral fertilization

PROVIDER: PRJNA688413 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13505500_1.fastq.gz	Fastqsanger.gz
	SRR13505500_2.fastq.gz	Fastqsanger.gz
	SRR13505600_1.fastq.gz	Fastqsanger.gz
	SRR13505600_2.fastq.gz	Fastqsanger.gz
	SRR13505700_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 899

Similar Datasets

Soil 16S and ITS amplicon sequences

Project description:Soil 16S and ITS amplicon sequences Raw sequence reads

| PRJNA746808 | ENA

The gut microbiome can transmit environmental responses to the next generation [16s-amplicon]

Project description:Environmental perturbations impact gene transcription. A subset of these transcriptional changes can be passed on to the next generation even in the absence of the initial stimulus. This phenomenon is known as transgenerational inheritance of environmental exposures (TIEE). Previous studies have mainly focused on what is transferred through the germ-line, i.e. DNA methylation, histone modifications, non-coding RNAs, etc. Nevertheless, the germ cells are not the only cells that are passed on from one generation to the next. The microbiota is also transmitted together with the host cells. In this study, we investigated the role of the gut microbiome in TIEE using Drosophila melanogaster as a model organism. We have reared flies in cold and control temperatures, 18 and 25 °C respectively, and looked at the transcriptional pattern in their offspring -grown in control condition- using RNA sequencing. To study the effect of the microbiome, we have carefully exchanged the parental feces introduced to the offspring. We observed genes responsive to thermal alteration, which have preserved their transcriptional status transgenerationally. A subset of these genes, mainly genes expressed in gut, were transcriptionally dependent on which microbiome they acquired. These findings show that the microbiota plays a previously unknown role in TIEE. Our study unveiled a new route for transmittance of environmental memories and thus represents an uncharted area to explore for researchers addressing non-genetic transgenerational inheritance.

2018-10-10 | GSE111116 | GEO

Project description:Bacterial community structure following mineral and organic fertilization

| PRJNA631349 | ENA

Project description:Soil bacterial community following mineral and organic fertilization

| PRJNA596584 | ENA

A study to investigate the effects of long-term organic and integrated fertilization on soil microbial community

Project description:Microbes play key roles in diverse biogeochemical processes including nutrient cycling. However, responses of soil microbial community at the functional gene level to long-term fertilization, especially integrated fertilization (chemical combined with organic fertilization) remain unclear. Here we used microarray-based GeoChip techniques to explore the shifts of soil microbial functional community in a nutrient-poor paddy soil with long-term (21 years).The long-term fertilization experiment site (set up in 1990) was located in Taoyuan agro-ecosystem research station (28°55’N, 111°27’E), Chinese Academy of Sciences, Hunan Province, China, with a double-cropped rice system. fertilization at various regimes.

2020-09-19 | GSE104014 | GEO

Smarcad1 coordinates innate immunity-linked gene expression in the intestinal epithelium [16S Amplicon-seq]

Project description:Smarcad1 is one of the most conserved chromatin remodelling factors, from yeast to human, with suggested functions in gene silencing, heterochromatin maintenance and genome stability. However, its role in tissue function is poorly understood. As this factor is highly expressed in the stem- and proliferative zone in the intestinal epithelium, we explored the role of this factor in this tissue. Specific deletion of Smarcad1 in the intestinal epithelium led to colitis resistance in the dextran sodium sulphate colitis model. We identified candidate members of the gut microbiome that elicit an epithelial Smarcad1-dependent colitis response.

2020-02-05 | GSE127546 | GEO

16S and ITS amplicon sequences

Project description:Tasmanian soil bacterial and fungal sequences

| PRJNA884366 | ENA

Marine Bacterial 16S Amplicon Sequences

Project description:Arctic Ocean Bacterial 16S rRNA

| PRJNA421665 | ENA

16S Amplicon seq

Project description:16S amplicon sequencing of microbiome samples from Nile tilapia.

| PRJEB40093 | ENA

soil amplicon

Project description:Guayule-associated soil microbiome