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Camellia sinensis strain:GZHS-2017-010

ABSTRACT: Transcriptome analysis of Camellia sinensis infected by Lasiodiplodia theobromae by RNA sequencing

PROVIDER: PRJNA689677 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13425447_1.fastq.gz	Fastqsanger.gz
	SRR13425447_2.fastq.gz	Fastqsanger.gz
	SRR13425448_1.fastq.gz	Fastqsanger.gz
	SRR13425448_2.fastq.gz	Fastqsanger.gz
	SRR13425449_1.fastq.gz	Fastqsanger.gz

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Lasiodiplodia theobromae strain:GZHS-2017-010

Project description:Identification of conserved and species-specific microRNAs in Lasiodiplodia theobromae during the infection of tea (Camellia sinensis) by microRNA sequencing from tea leaves samples

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Lasiodiplodia theobromae strain:GZHS-2017-010

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Lasiodiplodia theobromae strain:GZHS-2017-010

Project description:MicroRNAs(miRNAs) analysis of Lasiodiplodia theobromae cultured on PDB medium and PDB-matcha mixed medium during different periods

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Lasiodiplodia theobromae strain:GZHS-2017-010

Project description:Transcriptome analysis of Lasiodiplodia theobromae cultured on PDA medium under the stress of higher or lower temperatures and different periods

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Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [degradome]

Project description:MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. We sequenced 9 small RNA libraries and 9 RNA-Seq libraries from roots, leaves and flowers tissues. Through comprehensive computational analyses of 9 small RNA profiles, we identified 200 conserved miRNAs of which 138 have not been reported, and 56 novel miRNAs with 33 have not been reported. Nearly, two thousands genes have significantly different expression levels in tissues. In order to identify targets of miRNAs, we sequenced two degradome profiles from leaves and roots, respectively. Totally, more than 3,000 putative targets of conserved miRNAs were identified in both degradome profiles by using the SeqTar algorithm. These results clearly enhanced our understanding about small RNA guided gene regulations in Camellia sinensis.

2020-12-31 | GSE138150 | GEO

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [miRNA-seq]

2020-12-31 | GSE138149 | GEO

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [RNA-seq]

2020-12-31 | GSE138148 | GEO

Camellia sinensis cultivar:Fuding-dabaicha

Project description:Identification of known and novel miRNA targets in tea plant (Camellia sinensis) infected with Lasiodiplodia theobromae by degradome sequencing

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Proteomic analysis in leaf color variants and CKs from Camellia sinensis

Project description:Leaf colour variation is observed in several plants. We obtained two types of branches with yellow (H1) and variegated (H2) leaves from Camellia sinensis. To reveal the mechanisms that underlie the leaf colour variations, proteomic analysis using label-free MS-based approach was performed using leaves from variants and normal branches (CKs).

2018-10-26 | PXD004750 | Pride

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