Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio anguillarum strain:MCCC 1H00007

ABSTRACT: Vibrio anguillarum strain:MCCC 1H00007 Genome sequencing and assembly

PROVIDER: PRJNA689725 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAEOBC01.dat.gz	Other
	JAEOBC01.fasta.gz	Fasta.gz
	JAEOBC01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Vibrio anguillarum strain:MCCC 1H00003

Project description:Vibrio anguillarum strain:MCCC 1H00003 Genome sequencing and assembly

| PRJNA689695 | ENA

Strain-specific quorum-sensing responses determine virulence properties in Vibrio anguillarum

Project description:Here, we define the VanT-QS regulon and explore the diversity and trajectory of traits under QS regulation in the fish pathogen Vibrio anguillarum through comparative transcriptomics of two wildtype strains and their corresponding mutants artificially locked in QS-on (ΔvanO) or QS-off (ΔvanT) states. We reveal that populations of one strain primarily employ a QS-off response, while the other strain mainly maneuvers within the QS-on spectrum. Further examination of our V. anguillarum collection revealed that ~15 % of the strains were QS-negative and measurements of a total of 9 QS-positive strains suggested diverse QS responses, which underlines an extensive diversity of QS delegations. We show that QS control a plethora of genes involved in processes such as central metabolism, biofilm, competence, T6SS and virulence in V. anguillarum. Interestingly, the low QS response strain had an enlarged QS regulon compared to the high QS response strain, suggesting a potential trade-off between engagement in QS and output of the commitment. Moreover, the combination of present and previous virulence trials coupled with QS response measurements indicate that the QS state is an important driver of virulence toward fish larvae in V. anguillarum. We propose that infections by mixed-strain communities spanning diverse QS strategies might utilize the animal host more efficiently. Furthermore, we emphasize the importance of applying whole-cell spike-in normalization to study gene expression of cell populations with differential total RNA content per cell.

2024-09-02 | GSE184853 | GEO

The time-dependent global micro-transcriptome of Japanese flounder in response to Vibrio anguillarum infection

Project description:Japanese flounder (Paralichthys olivaceus) is an economic important aquaculture fish that was susceptible to Vibrio anguillarum. To fully deciphered the molecular mechanisms underlying flounder host defense against V. anguillarum infection, we perform the micro-transcriptome analysis of founder spleen with and without V. anguillarum infection at 3 time points.

2022-01-12 | GSE143478 | GEO

Vibrio anguillarum strain:HI618

Project description:Vibrio anguillarum strain:HI618 Genome sequencing and assembly

| PRJNA349812 | ENA

Vibrio anguillarum strain:PF4

Project description:Vibrio anguillarum strain:PF4 Genome sequencing and assembly

| PRJNA267082 | ENA

Vibrio anguillarum strain:4299

Project description:Vibrio anguillarum strain:4299 Genome sequencing and assembly

| PRJNA283570 | ENA

Vibrio anguillarum strain:T265

Project description:Vibrio anguillarum strain:T265 Genome sequencing and assembly

| PRJNA267076 | ENA

Vibrio anguillarum strain:HI610

Project description:Vibrio anguillarum strain:HI610 Genome sequencing and assembly

| PRJNA267180 | ENA

Vibrio anguillarum strain:V12

Project description:Vibrio anguillarum strain:V12 Genome sequencing and assembly

| PRJNA1077108 | ENA

Vibrio anguillarum strain:VA1

Project description:Vibrio anguillarum strain:VA1 Genome sequencing and assembly

| PRJNA1153050 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data