Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Albula goreensis isolate:SM-30Jul2019_1

ABSTRACT: Albula goreensis isolate:SM-30Jul2019_1 Genome sequencing and assembly

PROVIDER: PRJNA692825 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAERUA01.dat.gz	Other
	JAERUA01.fasta.gz	Fasta.gz
	JAERUA01.master.dat	Other
	SRR13649588_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Albula glossodonta isolate:HI-2016

Project description:Albula glossodonta isolate:HI-2016 Genome sequencing and assembly

| PRJNA668352 | ENA

Mycobacterium spongiae strain:FSD4b-SM | isolate:FSD4b-SM

Project description:Mycobacterium spongiae strain:FSD4b-SM | isolate:FSD4b-SM Genome sequencing and assembly

| PRJNA573113 | ENA

Mus musculus albula

Project description:Mus musculus albula Genome sequencing and assembly

| PRJNA974581 | ENA

Buchnera aphidicola strain:Sm | isolate:Midelt

Project description:Buchnera aphidicola strain:Sm | isolate:Midelt Genome sequencing

| PRJNA797932 | ENA

Mus musculus albula

Project description:Mus musculus albula Genome sequencing

| PRJNA657952 | ENA

Macaca arctoides isolate:LJ-SM-ZOO-2016

Project description:Macaca arctoides isolate:LJ-SM-ZOO-2016 Genome sequencing and assembly

| PRJNA779036 | ENA

Pseudomonas syringae pv. syringae SM strain:SM

Project description:Pseudomonas syringae pv. syringae SM strain:SM Genome sequencing and assembly

| PRJNA181198 | ENA

RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins

Project description:Background: Sm proteins are multimeric RNA-binding factors, found in all three domains of life. Eukaryotic Sm proteins, together with their associated RNAs, form small ribonucleoprotein (RNP) complexes important in multiple aspects of gene regulation. Comprehensive knowledge of the RNA components of Sm RNPs is critical for understanding their functions. Results: We developed a multi-targeting RNA-immunoprecipitation sequencing (RIP-seq) strategy to reliably identify Sm-associated RNAs from Drosophila ovaries and cultured human cells. Using this method, we discovered three major categories of Sm-associated transcripts: small nuclear (sn)RNAs, small Cajal body (sca)RNAs and mRNAs. Additional RIP-PCR analysis showed both ubiquitous and tissue-specific interactions. We provide evidence that the mRNA-Sm interactions are mediated by snRNPs, and that one of the mechanisms of interaction is via base pairing. Moreover, the Sm-associated mRNAs are mature, indicating a splicing-independent function for Sm RNPs. Conclusions: This study represents the first comprehensive analysis of eukaryotic Sm-containing RNPs, and provides a basis for additional functional analyses of Sm proteins and their associated snRNPs outside of the context of pre-mRNA splicing. Our findings expand the repertoire of eukaryotic Sm-containing RNPs and suggest new functions for snRNPs in mRNA metabolism.

2013-12-01 | GSE35842 | GEO

Meganola albula

Project description:Meganola albula overview

| PRJNA840984 | ENA

Albula glossodonta

Project description:Albula glossodonta overview

| PRJNA756062 | ENA