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Iris lactea var. chinensis

ABSTRACT: Iris lactea var. chinensis Transcriptome or Gene expression

PROVIDER: PRJNA697945 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13586155_1.fastq.gz	Fastqsanger.gz
	SRR13586155_2.fastq.gz	Fastqsanger.gz
	SRR13586156_1.fastq.gz	Fastqsanger.gz
	SRR13586156_2.fastq.gz	Fastqsanger.gz
	SRR13586157_1.fastq.gz	Fastqsanger.gz

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Project description:Iris lactea var. chinensis is a well-regarded ornamental plant in the genus Iris (family Iridaceae). In this report, we present the complete chloroplast (cp) genome sequence of I. lactea var. chinensis for the first time. The complete cp genome of I. lactea var. chinensis was assembled using high-throughput sequencing, and phylogenetic analysis was undertaken based on a dataset of coding regions. The cp genome of I. lactea var. chinensis measures 152,409 bp in length, with regions having two inverted copies (IR 26,026 bp), and separated by the large single copy (LSC 82,256 bp) and small single copy (SSC 18,101 bp) regions. The cp genome encodes 133 unique genes, including 87 different protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Based on a dataset of 69 chloroplast coding regions, the maximum-likelihood (ML) phylogenetic tree analysis indicated that Iris lactea var. chinensis clusters closely with Iris sanguinea. Thus, the complete chloroplast genome presented in this report may provide valuable genetic information not only for the future exploitation and utilization of this plant resource but also for further research investigating its relationship with other Iris species.

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Project description:Iris lactea var. chinensis (I. lactea var. chinensis) is a perennial herb halophyte with salt and drought tolerance. In this study, full-length transcripts of I. lactea var. chinensis were sequenced using the PacBio RSII sequencing platform. Moreover, the transcriptome was investigated under NaCl or polyethylene glycol (PEG) stress. Approximately 30.89 G subreads were generated and 31,195 unigenes were obtained by clustering the same isoforms by the PacBio RSII platform. A total of 15,466 differentially expressed genes (DEGs) were obtained under the two stresses using the Illumina platform. Among them, 9266 and 8390 DEGs were obtained under high concentrations of NaCl and PEG, respectively. In total, 3897 DEGs with the same expression pattern under the two stresses were obtained. The transcriptome expression profiles of I. lactea var. chinensis under NaCl or PEG stress obtained in this study may provide a resource for the same and different response mechanisms against different types of abiotic stress. Furthermore, the stress-related genes found in this study can provide data for future molecular breeding.

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