Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hot Spring metagenomic survey

ABSTRACT: Hot Spring metagenomic survey Raw sequence reads

PROVIDER: PRJNA698245 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16893504_1.fastq.gz	Fastqsanger.gz
	SRR16893504_2.fastq.gz	Fastqsanger.gz
	SRR16893470_1.fastq.gz	Fastqsanger.gz
	SRR16893470_2.fastq.gz	Fastqsanger.gz
	SRR16893471_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 50

Similar Datasets

Hot spring

Project description:metagenomic analysis of indian hot spring

| PRJEB20250 | ENA

Mammoth Hot Spring, Yellowstone National Park

Project description:The thermophilic Aquificales inhabit and play important biogeochemical roles in the geothermal environments globally. Although intensive studies on physiology, microbial ecology, biochemistry, metagenomics and metatranscriptomics of the Aquificales¬ species and Aquificales-containing environmental samples have been conducted, comprehensive understandings about their ecophysiology, especially in the natural niches have been limited. In the present study, an integrated suite of metagenomic, metatranscriptomic and metaproteomic analyses, for the first time, were conducted on a filamentous microbial community from the Apron and Channel Facies (ACF) of CaCO3 (travertine) deposition at Narrow Gauge, Mammoth Hot Springs, Yellowstone National Park.

2020-05-26 | PXD006506 | Pride

hot spring metagenome

Project description:hot spring metagenome Raw sequence reads

| PRJNA946126 | ENA

hot spring sediment

Project description:hot spring sediment Raw sequence reads

| PRJNA850157 | ENA

Yellowstone National Park Mammoth Hot Spring-EDTA

2020-05-26 | PXD006504 | Pride

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

2021-07-26 | E-MTAB-9191 | biostudies-arrayexpress

hot spring Ammoxidation MAG

Project description:hot spring Ammoxidation MAG Metagenomic assembly

| PRJNA1081664 | ENA

hot spring Ammoxidation MAG

Project description:hot spring Ammoxidation MAG Metagenomic assembly

| PRJNA1081759 | ENA

Hot spring sediment Sativali

Project description:Hot spring sediment Sativali Metagenomic assembly

| PRJNA748068 | ENA