Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schizosaccharomyces japonicus strain:CBS 5679

ABSTRACT: Schizosaccharomyces japonicus strain:CBS 5679 Genome sequencing and assembly

PROVIDER: PRJNA698797 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAHZNR01.dat.gz	Other
	JAHZNR01.fasta.gz	Fasta.gz
	JAHZNR01.master.dat	Other
	SRR15295840_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

small RNA discovery in fission yeast Schizosaccharomyces japonicus

Project description:We used massively parallel sequencing to discover and characterize small RNAs (sRNAs) from fission yeast Schizosaccharomyces japonicus. We found that, unlike in related S. pombe, a substantial fraction of sRNAs maps to transposons, both telomeric and centromeric. small RNA library from total RNA isolations from Schizosaccharomyces japonicus

2012-07-26 | E-GEOD-26902 | biostudies-arrayexpress

Schizosaccharomyces japonicus strain:Sj4

Project description:Schizosaccharomyces japonicus strain:Sj4 Genome sequencing and assembly

| PRJNA431027 | ENA

Schizosaccharomyces japonicus strain:h90

Project description:Schizosaccharomyces japonicus strain:h90 Genome sequencing and assembly

| PRJNA453683 | ENA

Schizosaccharomyces japonicus

Project description:Schizosaccharomyces japonicus Genome sequencing

| PRJNA206994 | ENA

small RNA discovery in fission yeast Schizosaccharomyces japonicus

2012-07-26 | GSE26902 | GEO

Schizosaccharomyces japonicus yFS275

Project description:Schizosaccharomyces japonicus yFS275 genome sequencing and assembly

| PRJNA992933 | ENA

Small RNA sequences from Schizosaccharomyces japonicus

Project description:Small interfering RNAs (siRNAs) are known to be involved in both transposon silencing and centromere function, leading us to investigate the interplay between these two roles in the Schizosaccharomyces lineage. In S. pombe, the centromeric repeats produce dicer-dependent siRNAs that are required for maintenance of centromeric structure, function and transcriptional silencing via Argonaute-dependent heterochromatin formation13. However, transposons are silenced in S. pombe by RNAi-independent mechanisms and do not produce abundant siRNAs. To investigate whether centromere-directed siRNA production is conserved within the transposon-rich centromeres of S. japonicus, we isolated and sequenced small RNAs from log-phase S. japonicus cultures. The small RNAs have a modal size of 23 nucleotides and 94% map to transposons, both telomeric and centromeric. Isolation and computational analysis of small RNAs from wild-type S. japonicus

2011-03-09 | E-GEOD-27837 | biostudies-arrayexpress

Small RNA sequences from Schizosaccharomyces japonicus

2011-03-09 | GSE27837 | GEO

Schizosaccharomyces japonicus

Project description:Small RNA sequences from Schizosaccharomyces japonicus

| PRJNA138031 | ENA

Separable roles for RNAi in regulation of transposable elements and viability in the fission yeast Schizosaccharomyces japonicus [RNA-Seq]

Project description:RNA-seq was performed to identify transcripts differentially expressed in Schizosaccharomyces japonicus cells lacking Dcr1.

2022-02-17 | GSE185580 | GEO