Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Groundwater metagenome

ABSTRACT: New Zealand aquifer microbiology

PROVIDER: PRJNA699054 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAHFCO01.dat.gz	Other
	JAHFCO01.fasta.gz	Fasta.gz
	JAHFCO01.master.dat	Other
	JAHFFA01.dat.gz	Other

Items per page:

1 - 5 of 236

Similar Datasets

groundwater metagenome

Project description:Rifle, CO metagenome from aquifer

| PRJNA268031 | ENA

Aquifer metaproteomics - Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer

Project description:Groundwater-derived microorganisms are known to play an important role in biogeochemical C, S and N cycling. Thereby, the presence and majorly the activity of microorganisms in aquifers affect enormously the nutrient cycling. However, the diversity and their functional capability in natural aquifers are still rare and therefore a better knowledge of the core microbial communities is urgently needed. Metaproteome analysis was applied to characterize the repertoire of microbes in the depth and to identify the key drivers of major biogeochemical processes. Therefore, 1000 L water from the aquifer was sampled by filtration on 0.3 µm glass filters. After protein extraction, proteolytic cleavage and mass spectrometric analysis (Ultimate 3000 nanoRSLC coupled to Q Exactive HF instrument), 3808 protein groups (2371 proteins with ≥2 peptides) were identified from 13,204 peptides. The findings of our study have broad implications for the understanding of aquifer cycling’s which finally leads to a greatly improved understanding of the ecosystem services provided by the microbial communities present in aquifers. In the future, functional results would allow to monitor and to assess pollution effects which would beneficially assist groundwater resource management.

2016-12-23 | PXD004351 | Pride

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 metagenome

| PRJNA365671 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 metagenome

| PRJNA416578 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 metagenome

| PRJNA416584 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20 metagenome

| PRJNA416586 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65 metagenome

| PRJNA416587 | ENA

groundwater metagenome

Project description:Microbial succession following a simulated CO2 leakage into a shallow aquifer

| PRJNA258542 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 metagenome

| PRJNA416591 | ENA

groundwater metagenome

Project description:Groundwater microbial communities from aquifer - Crystal Geyser CG05_land_8/20/14_0.10 metagenome

| PRJNA416582 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data