Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Amphiprion clarkii population structure and outlier loci

PROVIDER: PRJNA699463 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13628000.fastq.gz	Fastqsanger.gz
	SRR13628002.fastq.gz	Fastqsanger.gz
	SRR13628003.fastq.gz	Fastqsanger.gz
	SRR13628004.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

Amphiprion clarkii

Project description:Amphiprion clarkii overview

| PRJNA906215 | ENA

Project description:Sexual development studies of Amphiprion clarkii

| PRJNA850025 | ENA

Amphiprion clarkii

Project description:Amphiprion clarkii Genome sequencing and assembly

| PRJNA813357 | ENA

Amphiprion clarkii

Project description:Amphiprion clarkii whole-genome raw sequence reads

| PRJNA1025355 | ENA

Genomic and transcriptomic landscapes of independent invasions of the Pacific Oyster Crassostrea gigas

Project description:Upon colonizing new habitats invasive species face a series of new selection pressures as a result of changing abiotic conditions and novel biotic interactions with native species. These new selection pressures can be accommodated by different mechanism that act on different levels and across different time scales: 1) By changing transcriptomic profiles species can react by plasticity within individual physiological limitations. 2) Invasive populations can adapt by fixing beneficial genetic variants in response to the newly encountered selection pressures. Here, we compare the genomic and transcriptomic landscapes of two independent invasions of the Pacific Oyster Crassostrea gigas into the North Sea. In detail, we combine high density full genome resequencing and low density ddRAD on the genomic level with RNAseq on the transcriptomic level to reveal outlier loci (SNPs) indicative of adaptation, as well as transcriptomic profiles from a translocation experiment to show immediate physiological reactions. The low congruence between differentially regulated genes and outlier loci indicates that different processes act on the different time scales. By contrasting population outlier loci and population specific transcriptomic profiles we can thus identify relevant processes acting during different phases of the invasive process, which will allow to take a glimpse at the traits and processes characterizing successful invasions.

2020-09-30 | E-MTAB-9186 | biostudies-arrayexpress

T3 effects on clownfish larvae

Project description:Investigate the effects of thyroid hormone on Amphiprion ocellaris larvae Amphiprion larvae were treated for 2 days at 10-7M T3

2023-06-22 | GSE228441 | GEO

Population structure and ancestry of Qinchuan cattle by GeneSeek HD Bovine 77k Genotyping BeadChip

Project description:GeneSeek HD Bovine 77k Genotyping array is used to estimate population structure and ancestry of bovine and evaluate loci responsible for complex traits. Further, copy number variation of bovine can be estimated by GeneSeek HD Bovine 77k Genotyping array. Here, we estimate population structure and ancestry of Qinchuan cattle.

2017-06-15 | GSE100038 | GEO

MPI effects on clownfish larvae

Project description:Investigate the effects of goitrogenous compound on Amphiprion ocellaris larvae Amphiprion larvae were treated for 19 days with a mix of Methimazole, potassium perchlorate and iopanoic acid

2023-06-22 | GSE228438 | GEO

SR9243 (LXR antagonist) and T3 effects on clownfish larvae

Project description:Investigate the effects of SR9243 and T3 on Amphiprion ocellaris larvae Amphiprion larvae were treated for 5 days at 10-7M SR9243 and at 10-7M T3

2023-06-22 | GSE232363 | GEO

Project description:Summer flounder population structure and candidate loci

| PRJNA477007 | ENA