Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq III]

ABSTRACT: Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq III]

PROVIDER: PRJNA701614 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13697343_1.fastq.gz	Fastqsanger.gz
	SRR13697343_2.fastq.gz	Fastqsanger.gz
	SRR13697344_1.fastq.gz	Fastqsanger.gz
	SRR13697344_2.fastq.gz	Fastqsanger.gz
	SRR13697345_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq I]

Project description:Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq I]

| PRJNA701616 | ENA

Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq II]

Project description:Next generation sequencing of transcript abundance during growth mycelia in the Magnaporthe oryzae [RNA-Seq II]

| PRJNA701615 | ENA

Next Generation Sequencing of transcript abundance in rice inoculated with Magnaporthe oryzae under 22℃ and 28℃

Project description:We report that rice inoculated with Magnaporthe oryzae at different temperatures and analysis of the whole genome expression to shed light on temperature-mediated rice disease resistance.

2022-04-01 | GSE173850 | GEO

Repressive H3K36me2 reader during growth mycelia in the Magnaporthe oryzae

Project description:Repressive H3K36me2 reader during growth mycelia in the Magnaporthe oryzae

| PRJNA1034113 | ENA

Genome-wide mapping of a repressive H3K36me2 reader during growth mycelia in the Magnaporthe oryzae

Project description:A putative EAF3/MRG15 ortholog N1617, containing chromo and MRG domain, is a partner of Ash1 in Magnaporthe oryzae

2023-11-29 | GSE246678 | GEO

Next Generation Sequencing of a repressive H3K36me2 reader during growth mycelia in the Magnaporthe oryzae

Project description:A putative EAF3/MRG15 ortholog N1617, containing chromo and MRG domain, is a partner of Ash1 in Magnaporthe oryzae

2023-11-29 | GSE246677 | GEO

The role of the Tra1p transcription factor of Magnaporthe oryzae in spore adhesion and pathogenic development

Project description:This SuperSeries is composed of the following subset Series: GSE36224: Comparison of transcript abundance in aerial mycelium of the Magnaporthe oryzae TRA1-deleted mutant and its parental strain GSE36225: Comparison of transcript abundance in ungerminated spores of the Magnaporthe oryzae TRA1-deleted mutant and its parental strain Refer to individual Series

2012-03-03 | E-GEOD-36226 | biostudies-arrayexpress

Phosphoproteome of Magnaporthe oryzae

Project description:Rice blast caused by Magnaporthe oryzae is the most devastating disease of cultivated rice. Several protein kinase cascades have been known to be essential to pathogenesis or important for response to stress, mycelial growth and conidiation in M. oryzae. However, phosphoproteins and their phosphorylation sites (p-sites) in this important fungal pathogen remain largely to be identified. In this study, 8087 phosphopeptides corresponding to 9825 p-sites from 1147 phosphoproteins were identified in mycelia of M. oryzae under a false discovery rate of < 0.55% at the peptide level. Notably, 33 previously reported pathogenesis-related proteins were included in the phosphoproteins at the mascot delta score 10. Further analyses of 581 motif-containing phosphoproteins that met more stringent criteria revealed that the phosphoproteins shared 19 distinct phosphorylation motifs, including the motif RxxpSP that was newly identified in this study but is widely distributed in diverse organisms. These phosphoproteins were mapped into 81 biological pathways. A total of 82 acidic motif-containing phosphoproteins were identified. Surprisingly, none of them except one were mapped to any of the metabolic pathways. Furthermore, a prediction disclosed a total of 174 kinase-substrate specific interactions in mycelia of M. oryzae. This study also detected phosphorylation of the tyrosine phosphatase Pmp1 and 7 other proteins upstream of Pmk1, but not Pmk1 and its downstream transcription factors. These results prompted a necessary revision of Pmk1 MAPK cascade, in which dephosphorylation of Pmk1 by Pmp1 in mycelia may block the activation of downstream targets.

2017-07-17 | PXD002364 | Pride

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using RNA-Seq

Project description:Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other.

2012-02-13 | GSE30327 | GEO

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using HT-SuperSAGE.

2012-02-13 | GSE30256 | GEO