Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The rhizosphere bacterialcommunities associated in wild ginseng and cultivated ginseng

PROVIDER: PRJNA701796 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13718003.fastq.gz	Fastqsanger.gz
	SRR13718004.fastq.gz	Fastqsanger.gz
	SRR13718005.fastq.gz	Fastqsanger.gz
	SRR13718006.fastq.gz	Fastqsanger.gz
	SRR13718006_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:field-cultivated ginseng rhizosphere in South Korea

| PRJNA1126992 | ENA

Project description:Diversity and structure of the rhizosphere microbial communities of wild and cultivated ginseng

| PRJNA701800 | ENA

Project description:Transcriptome analysis of cultivated ginseng and wild ginseng of different growth years

| PRJNA762437 | ENA

Label-free Quantitative Proteomic analysis of drought-responsive proteins in Panax ginseng Meyer

Project description:Korean ginseng (Panax ginseng Meyer) has long been cultivated as an important medicinal plant. Drought results from the moderate water loss, which primarily impairs the growth of ginseng and reduction of yield loss. However, basis of biological clues to understanding the accurate mechanisms related to drought stress in proteome level are still elusive. Therefore, we carried out label-free quantitative proteomic analysis using ginseng roots subjected to drought stress which was grown at less than 10% soil moisture for two weeks, compared with normal ginseng which was grown at 25% soil moisture. The acquired proteins were carried out label-free proteomic analysis using LC-MS/MS. This approach led to the identification of total 2,471 proteins, and out of 195 proteins showed significant modulation. Functional classification revealed that proteins related to secondary metabolites, calcium signaling, and photosynthesis were enriched in control sample (cluster_1), while proteins associated with stress responsive, redox, electron transport, and protein synthesis were mainly dominated in cluster_2 (drought stress condition). Taken together, our results provided an overview of the drought-induced proteomic changes in ginseng root, and it is correlated with physiological changes, contributing to reveal potential marker at proteome level in ginseng.

2023-09-21 | PXD028602 | Pride

Project description:Metagenomic assessment of rhizosphere microbial communities associated with cultivated and wild sweet sorghum

| PRJNA1131609 | ENA

Project description:Bacterial diversity in cultivated ginseng soil

| PRJNA1004743 | ENA

Project description:Fungal diversity in cultivated ginseng soil

| PRJNA1004746 | ENA

Project description:Ginseng rhizosphere soil bacteria

| PRJNA704759 | ENA

Project description:Evaluation of rain-shelter cultivation mode effects on microecological environment of mountain-cultivated ginseng rhizosphere

| PRJNA1151822 | ENA

Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans

Project description:Cultivated soybean has domesticated in China for a long history, and there are several significant phenotypic differences between wild and cultivated soybeans. Seed of cultivar is generally larger than wild soybean, therefore here we comprehensively analyzed transcriptomes of thirteen soybean accessions seeds including seven wild soybeans and six landraces through applying strand-specific RNA sequencing. Differential expressed genes related seed weight were identified, some of them were known to be associated with seed development in Arabidopsis. Noncoding RNAs are known to play important roles in plant development, and we profiled the expression pattern of long noncoding RNA (lncRNA) in cultivated and wild soybean seeds. We have identified 1,251 long intergenic noncoding RNA, 243 intronic RNA and 81 antisense lncRNA, transcriptional levels of a number of lncRNAs were significantly different between cultivated and wild soybeans, suggesting that lncRNA may be involved in soybean seed development.

2017-06-13 | GSE94366 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data