Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of Pseudarthrobacter psychrotolerans YJ56: on temperature

ABSTRACT: RNA-seq of Pseudarthrobacter psychrotolerans YJ56: on temperature

PROVIDER: PRJNA704698 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13780205.fastq.gz	Fastqsanger.gz
	SRR13780206.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

RNA-seq of Pseudarthrobacter psychrotolerans YJ56: on temperature

Project description:Comparison for gene expression of Pseudarthrobacter psychrotolerans YJ56: grown on 13℃ or 25℃

2021-02-25 | GSE167471 | GEO

Pseudarthrobacter psychrotolerans strain:YJ56 | isolate:Yoonjae Shin

Project description:Pseudarthrobacter psychrotolerans strain:YJ56 | isolate:Yoonjae Shin Genome sequencing

| PRJNA600828 | ENA

Morphological and physiological adaptations of psychrophilic Pseudarthrobacter psychrotolerans YJ56 under temperature stress.

Project description:Both culture-independent and culture-dependent analyses using Nanopore-based 16S rRNA sequencing showed that short-term exposure of Antarctic soils to low temperature increased biomass with lower bacterial diversity and maintained high numbers of the phylum Proteobacteria, Firmicute, and Actinobacteria including Pseudarthrobacter species. The psychrophilic Pseudarthrobacter psychrotolerans YJ56 had superior growth at 13 °C, but could not grow at 30 °C, compared to other bacteria isolated from the same Antarctic soil. Unlike a single rod-shaped cell at 13 °C, strain YJ56 at 25 °C was morphologically shifted into a filamentous bacterium with several branches. Comparative genomics of strain YJ56 with other genera in the phylum Actinobacteria indicate remarkable copy numbers of rimJ genes that are possibly involved in dual functions, acetylation of ribosomal proteins, and stabilization of ribosomes by direct binding. Our proteomic data suggested that Actinobacteria cells experienced physiological stresses at 25 °C, showing the upregulation of chaperone proteins, GroEL and catalase, KatE. Level of proteins involved in the assembly of 50S ribosomal proteins and L29 in 50S ribosomal proteins increased at 13 °C, which suggested distinct roles of many ribosomal proteins under different conditions. Taken together, our data highlights the cellular filamentation and protein homeostasis of a psychrophilic YJ56 strain in coping with high-temperature stress.

| S-EPMC10495460 | biostudies-literature

RNA-Seq Analysis

Project description:RNA-Seq analysis carried out in three different backcrosses based on Iberian breed with Landrace, Pietrain and Duroc breeds

2017-10-31 | PRJEB23068 | EVA

Pseudarthrobacter

Project description:Pseudarthrobacter sp. overview

| PRJNA550163 | ENA

Pseudarthrobacter siccitolerans

Project description:Pseudarthrobacter siccitolerans overview

| PRJNA958397 | ENA

Pseudarthrobacter sulfonivorans

Project description:Pseudarthrobacter sulfonivorans overview