Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Prunus cerasus x Prunus canescens

ABSTRACT: cherry drought response transctipt

PROVIDER: PRJNA704726 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13783521_1.fastq.gz	Fastqsanger.gz
	SRR13783521_2.fastq.gz	Fastqsanger.gz
	SRR13783522_1.fastq.gz	Fastqsanger.gz
	SRR13783522_2.fastq.gz	Fastqsanger.gz
	SRR13783523_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Prunus cerasus

Project description:Parental origins of the cultivated tetraploid sour cherry (Prunus cerasus L.)

| PRJNA788510 | ENA

Prunus avium transcriptome profiling

Project description:Profiling of fruit and leaves transcriptomes of cherry cultivars

2019-02-26 | GSE121997 | GEO

Prunus cerasus

Project description:Prunus cerasus Transcriptome or Gene expression

| PRJNA431916 | ENA

Prunus cerasus

Project description:Prunus cerasus overview

| PRJNA863358 | ENA

Genome of tetraploid sour cherry (Prunus cerasus L.) 'Montmorency' identifies three distinct ancestral Prunus genomes.

Project description:Sour cherry (Prunus cerasus L.) is a valuable fruit crop in the Rosaceae family and a hybrid between progenitors closely related to extant Prunus fruticosa (ground cherry) and Prunus avium (sweet cherry). Here we report a chromosome-scale genome assembly for sour cherry cultivar Montmorency, the predominant cultivar grown in the USA. We also generated a draft assembly of P. fruticosa to use alongside a published P. avium sequence for syntelog-based subgenome assignments for 'Montmorency' and provide compelling evidence P. fruticosa is also an allotetraploid. Using hierarchal k-mer clustering and phylogenomics, we show 'Montmorency' is trigenomic, containing two distinct subgenomes inherited from a P. fruticosa-like ancestor (A and A') and two copies of the same subgenome inherited from a P. avium-like ancestor (BB). The genome composition of 'Montmorency' is AA'BB and little-to-no recombination has occurred between progenitor subgenomes (A/A' and B). In Prunus, two known classes of genes are important to breeding strategies: the self-incompatibility loci (S-alleles), which determine compatible crosses, successful fertilization, and fruit set, and the Dormancy Associated MADS-box genes (DAMs), which strongly affect dormancy transitions and flowering time. The S-alleles and DAMs in 'Montmorency' and P. fruticosa were manually annotated and support subgenome assignments. Lastly, the hybridization event 'Montmorency' is descended from was estimated to have occurred less than 1.61 million years ago, making sour cherry a relatively recent allotetraploid. The 'Montmorency' genome highlights the evolutionary complexity of the genus Prunus and will inform future breeding strategies for sour cherry, comparative genomics in the Rosaceae, and questions regarding neopolyploidy.

| S-EPMC10323630 | biostudies-literature

4plex_tomato_2013_03: Effect of drought stress on the transcriptome of tomato leaves

Project description:4plex_tomato_2013_03 - 4plex_tomato_2013_03 - What are the genes implied in drought resistance in tomato ? - 2 strains of tomato (Cervil, a cherry tomato, and Levovil, an large fruited tomato) were cultivated under normal hydric conditions and drought stress. Young leaves were gathered 3 1/2 months after sawing for analysis.

2015-07-01 | GSE69898 | GEO

4plex_tomato_2013_03: Effect of drought stress on the transcriptome of tomato leaves

2015-07-01 | E-GEOD-69898 | biostudies-arrayexpress

The detection of Prunus virus F and its distribution in Hungarian sour cherry orchards

Project description:Viromes of sour and sweet cherry trees in Hungarian germ line collections were surveyed using small RNA HTS as an unbiased method. RNA from leaf samples of different cultivars were purified and used to produce seven pools from which small RNA HTS libraries were prepared. The sequenced reads were analyzed using bioinformatic methods to revel the presence of viruses in the samples. Presence of the viruses were validated using RT-PCR.

2024-10-31 | GSE233558 | GEO

Prunus cerasus cultivar:Montmorency

Project description:Prunus cerasus cv. Montmorency v1 Genome sequencing and assembly

| PRJNA922079 | ENA

Prunus

Project description:Expression analysis of hybrid flowering cherry seedlings

| PRJDB11531 | ENA