Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Vaccinium darrowii Genome sequencing and assembly, principal haplotype

PROVIDER: PRJNA708305 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13865240_1.fastq.gz	Fastqsanger.gz
	SRR13865240_2.fastq.gz	Fastqsanger.gz
	SRR13865241_1.fastq.gz	Fastqsanger.gz
	SRR13865241_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 42

Similar Datasets

Vaccinium darrowii

Project description:Vaccinium darrowii Genome sequencing and assembly, principal haplotype

| PRJNA706655 | ENA

Vaccinium darrowii

Project description:Vaccinium darrowii alternative genome sequencing and assembly

| PRJNA707651 | ENA

Vaccinium darrowii

Project description:Vaccinium darrowii overview

| PRJNA781716 | ENA

Vaccinium uliginosum

Project description:Vaccinium uliginosum (bog bilberry) genome assembly, ddVacUlig2, principal haplotype

| PRJNA1164265 | ENA

Vaccinium parvifolium

Project description:Vaccinium parvifolium (red huckleberry) genome assembly, ddVacParv1, principal haplotype

| PRJNA1155716 | ENA

Vaccinium membranaceum

Project description:Vaccinium membranaceum (thinleaf huckleberry) genome assembly, ddVacMemb1, principal haplotype

| PRJNA1164262 | ENA

Vaccinium ovatum

Project description:Vaccinium ovatum (evergreen huckleberry) genome assembly, ddVacOvat1, principal haplotype

| PRJNA1155719 | ENA

Transcriptomic analysis of plant Cd-regulated genes in the ericoid mycorrhizal symbiosis

Project description:Illumina HiSeq2000 technology was used to generate mRNA profiles from Vaccinium myrtillus mycorrhizal and non-mycorrhizal roots with or without Cadmium treatment. 150bp reads were generated and aligned to a Vaccinium myrtillus de novo assembly as reference using CLC Genomics Workbench 8.

2020-02-12 | GSE119554 | GEO

Vaccinium ovalifolium

Project description:Vaccinium ovalifolium (oval-leaved blueberry) genome assembly, ddVacOval1, principal haplotype

| PRJNA1189090 | ENA

CRISPR-based targeted haplotype-resolved assembly of a megabase region [EPIC]

Project description:Constructing high-quality haplotype-resolved genome assemblies has substantially improved the ability to detect and characterize genetic variants. A targeted approach providing readily access to the rich information from haplotype-resolved genome assemblies will be appealing to groups of basic researchers and medical scientists focused on specific genomic regions. Here, using the 4.5 megabase, notoriously difficult-to-assemble major histocompatibility complex (MHC) region as an example, we demonstrated an approach to construct haplotype-resolved assembly of the targeted genomic region with the CRISPR-based enrichment. Compared to the results from haplotype-resolved genome assembly, our targeted approach achieved comparable completeness and accuracy with reduced computing complexity, sequencing cost, as well as the amount of starting materials. Moreover, using the targeted assembled personal MHC haplotypes as the reference both improves the quantification accuracy for sequencing data and enables allele-specific functional genomics analyses of the MHC region. Given its highly efficient use of resources, our approach can greatly facilitate population genetic studies of targeted regions, and may pave a new way to elucidate the molecular mechanisms in disease etiology.

2022-11-15 | GSE192501 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data