The microbial mechanism of soil greenhouse gas emissions under long-term conservation tillage in dryland (Soil denitrifying microbial communities)
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ABSTRACT:
PROVIDER: PRJNA714271 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR13987607_1.fastq.gz | Fastqsanger.gz | |||
| SRR13987607_2.fastq.gz | Fastqsanger.gz | |||
| SRR13986908_1.fastq.gz | Fastqsanger.gz | |||
| SRR13986908_2.fastq.gz | Fastqsanger.gz | |||
| SRR13987608_1.fastq.gz | Fastqsanger.gz |
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Project description:The microbial mechanism of soil greenhouse gas emissions under long-term conservation tillage in dryland (16S rRNA amplicon sequencing)
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Project description:Raw sequence reads: The microbial mechanism of soil greenhouse gas emissions under long-term conservation tillage in dryland (Soil nitrification microbial communities)
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Project description:Organic reduced tillage aims to combine the environmental benefits of organic farming and conservation tillage to increase sustainability and soil quality. In temperate climates, there is currently no knowledge about its impact on greenhouse gas emissions and only little information about soil organic carbon (SOC) stocks in these management systems. We therefore monitored nitrous oxide (N2O) and methane (CH4) fluxes besides SOC stocks for two years in a grass-clover ley - winter wheat - cover crop sequence. The monitoring was undertaken in an organically managed long-term tillage trial on a clay rich soil in Switzerland. Reduced tillage (RT) was compared with ploughing (conventional tillage, CT) in interaction with two fertilisation systems, cattle slurry alone (SL) versus cattle manure compost and slurry (MC). Median N2O and CH4 flux rates were 13 μg N2O-N m-2 h-1 and -2 μg CH4C m-2 h-1, respectively, with no treatment effects. N2O fluxes correlated positively with nitrate contents, soil temperature, water filled pore space and dissolved organic carbon and negatively with ammonium contents in soil. Pulse emissions after tillage operations and slurry application dominated cumulative gas emissions. N2O emissions after tillage operations correlated with SOC contents and collinearly to microbial biomass. There was no tillage system impact on cumulative N2O emissions in the grass-clover (0.8-0.9 kg N2O-N ha-1, 369 days) and winter wheat (2.1-3.0 kg N2O-N ha-1, 296 days) cropping seasons, with a tendency towards higher emissions in MC than SL in winter wheat. Including a tillage induced peak after wheat harvest, a full two year data set showed increased cumulative N2O emissions in RT than CT and in MC than SL. There was no clear treatment influence on cumulative CH4 uptake. Topsoil SOC accumulation (0-0.1 m) was still ongoing. SOC stocks were more stratified in RT than CT and in MC than SL. Total SOC stocks (0-0.5 m) were higher in RT than CT in SL and similar in MC. Maximum relative SOC stock difference accounted for +8.1 Mg C ha-1 in RT-MC compared to CT-SL after 13 years which dominated over the relative increase in greenhouse gas emissions. Under these site conditions, organic reduced tillage and manure compost application seems to be a viable greenhouse gas mitigation strategy as long as SOC is sequestered.
| S-EPMC5362153 | biostudies-literature
Project description:BackgroundLittle is known about the combined impacts of global environmental changes and ecological disturbances on ecosystem functioning, even though such combined impacts might play critical roles in shaping ecosystem processes that can in turn feed back to climate change, such as soil emissions of greenhouse gases.Methodology/principal findingsWe took advantage of an accidental, low-severity wildfire that burned part of a long-term global change experiment to investigate the interactive effects of a fire disturbance and increases in CO(2) concentration, precipitation and nitrogen supply on soil nitrous oxide (N(2)O) emissions in a grassland ecosystem. We examined the responses of soil N(2)O emissions, as well as the responses of the two main microbial processes contributing to soil N(2)O production--nitrification and denitrification--and of their main drivers. We show that the fire disturbance greatly increased soil N(2)O emissions over a three-year period, and that elevated CO(2) and enhanced nitrogen supply amplified fire effects on soil N(2)O emissions: emissions increased by a factor of two with fire alone and by a factor of six under the combined influence of fire, elevated CO(2) and nitrogen. We also provide evidence that this response was caused by increased microbial denitrification, resulting from increased soil moisture and soil carbon and nitrogen availability in the burned and fertilized plots.Conclusions/significanceOur results indicate that the combined effects of fire and global environmental changes can exceed their effects in isolation, thereby creating unexpected feedbacks to soil greenhouse gas emissions. These findings highlight the need to further explore the impacts of ecological disturbances on ecosystem functioning in the context of global change if we wish to be able to model future soil greenhouse gas emissions with greater confidence.
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Project description:Investigating responses of soil greenhouse gas (GHG) emissions to vegetation restoration is important for global warming mitigation. On the Loess Plateau, a wide range of vegetation restoration strategies have been implemented to control land degradation. However, the thorough quantification of soil GHG emissions triggered by different modes of vegetation restoration is insufficient. There is still a knowledge gap regarding the regulation of soil biochemical and microbial processing on soil GHG emissions. To do so, we compared responses of soil GHG emissions to various types of vegetation restoration on the Loess Plateau, and investigated the changes in soil properties as well as microbial composition and activities. We found that artificial plantation of Caragana korshinskii had low soil carbon dioxide (CO2) emission, while natural grassland had high CO2 emission. The possible explanations could be related to higher moisture and microbial biomass carbon, and greater nitrogen limitation in natural grassland, which was controlled by actinomycetes and gram-negative bacteria. Natural grassland had low soil nitrous oxide (N2O) emission and high methane (CH4) uptake, whereas Prunus mume had high N2O emission and Medicago sativa had low CH4 uptake, respectively. Soil N2O emission could be driven by fungi and gram-positive bacteria which were affected by N availability and dissolved organic carbon. Soil CH4 consumption was associated with anaerobic bacteria and gram-negative bacteria which were affected by N availability and moisture. These different emissions of CO2, N2O and CH4 generated the largest total GHG emissions for plantation of Prunus mume, but the smallest total GHG emissions for natural grassland and plantation of leguminous Caragana korshinskii. Overall, our findings suggested that the restoration of natural grassland and artificial N-fixing shrubland like Caragana korshinskii should be encouraged to alleviate GHG emissions, with the practical implications for selecting suitable modes and species to improve ecological sustainability in degraded lands.
| S-EPMC11664210 | biostudies-literature
Project description:Soil tillage practices have a profound influence on the physical properties of soil and the greenhouse gas (GHG) balance. However there have been very few integrated studies on the emission of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) and soil biophysical and chemical characteristics under different soil management systems. We recorded a significantly higher net global warming potential under conventional tillage systems (26-31% higher than zero tillage systems). Crucially the 3-D soil pore network, imaged using X-ray Computed Tomography, modified by tillage played a significant role in the flux of CO2 and CH4. In contrast, N2O flux was determined mainly by microbial biomass carbon and soil moisture content. Our work indicates that zero tillage could play a significant role in minimising emissions of GHGs from soils and contribute to efforts to mitigate against climate change.
| S-EPMC3975454 | biostudies-literature
Project description:IntroductionMore than half of the world's population consumes rice as their primary food. The majority of rice production is concentrated in Asia, with the top 10 rice-growing countries accounting for 84% of the world's total rice cultivation. However, rice production is also strongly linked to environmental changes. Among all the global sources of greenhouse gas (GHG) emissions, paddy cultivation stands out as a significant contributor to global methane (CH4) and nitrous oxide (N2O) emissions. This contribution is expected to increase further with the projected increase of 28% in global rice output by 2050. Hence, modifications to rice management practices are necessary both to increase yield and mitigate GHG emissions.MethodsWe investigated the effect of seedling treatment, soil application, and foliar application of a methane-derived microbial biostimulant on grain yield and GHG emissions from rice fields over three seasons under 100% fertilizer conditions. Further, microbial biostimulant was also tested under 75% nitrogen (N) levels to demonstrate its effect on grain yield. To understand the mechanism of action of microbial biostimulant on crop physiology and yield, a series of physiological, transcript, and metabolite analyses were also performed.ResultsOur three-season open-field studies demonstrated a significant enhancement of grain yield, up to 39%, with a simultaneous reduction in CH4 (31%-60%) and N2O (34%-50%) emissions with the use of methane-derived microbial biostimulant. Under 75% N levels, a 34% increase in grain yield was observed with microbial biostimulant application. Based on the physiological, transcript, and metabolite analyses data, we were further able to outline the potential mechanisms for the diverse synergistic effects of methane-derived microbial biostimulant on paddy, including indole-3-acetic acid production, modulation of photosynthesis, tillering, and panicle development, ultimately translating to superior yield.ConclusionThe reduction in GHG emission and enhanced yield observed under both recommended and reduced N conditions demonstrated that the methane-derived biostimulant can play a unique and necessary role in the paddy ecosystem. The consistent improvements seen across different field trials established that the methane-derived microbial biostimulant could be a scalable solution to intensify rice productivity with a lower GHG footprint, thus creating a win-win-win solution for farmers, customers, and the environment.
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Project description:Degraded dryland soil Raw sequence reads
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