Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

ABSTRACT: Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

PROVIDER: PRJNA715568 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14004111_1.fastq.gz	Fastqsanger.gz
	SRR14004111_2.fastq.gz	Fastqsanger.gz
	SRR14004112_1.fastq.gz	Fastqsanger.gz
	SRR14004112_2.fastq.gz	Fastqsanger.gz
	SRR14004113_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

Project description:To understand the impact of murine rotavirus infection on mouse intestinal epithelial tissue, we isolated total intestinal epithelium from uninfected and infected C57Bl6J mice and performed single-cell RNAseq.

2021-10-04 | GSE169197 | GEO

Murine rotavirus infects and replicates in intestinal tuft cells

Project description:RNAseq of coding and noncoding RNA isolated from intestinal tuft cells reveals murine rotavirus replication in intestinal tuft cells.

2021-10-04 | GSE168773 | GEO

Murine rotavirus infects and replicates in intestinal tuft cells

Project description:Murine rotavirus infects and replicates in intestinal tuft cells

| PRJNA713867 | ENA

RNAseq of small intestinal epithelium extracted from mice infected with Nippostrongylus brasiliensis

Project description:The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. Here we sequenced the small intestinal epithelium from mice infected with Nippostrongylus brasiliensis to determine how the intestinal epithelium adapts in the context of an infection. By comparing these data to small intestinal organoids treated with cytokines (see related accessions) we determine that the intestinal epithelial response to N. brasiliensis infection correspond to a type II infection driven by IL-13.

2022-05-08 | E-MTAB-9183 | biostudies-arrayexpress

RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

Project description:The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. Here we sequenced the colon intestinal epithelium from mice infected with Citrobacter rodentium to determine how the intestinal epithelium adapts in the context of an infection. By comparing these data to small intestinal organoids treated with cytokines (see related accessions) we determine that the intestinal epithelial response to C. rodentium infection correspond to a type III infection driven by IL22.

2022-05-08 | E-MTAB-9184 | biostudies-arrayexpress

RNAseq of small intestinal epithelium extracted from mice infected with Nippostrongylus brasiliensis

Project description:RNAseq of small intestinal epithelium extracted from mice infected with Nippostrongylus brasiliensis

| PRJEB38675 | ENA

RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

Project description:RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

| PRJEB38676 | ENA

Transcriptomic analysis of in vitro cultured horizontal basal cells of the murine olfactory epithelium

Project description:We report bulk RNAseq of in vitro cultured horizontal basal cells, and in vivo isoalted respiratory basal cells of the murine olfactory epithelium, and compared their profiles with pre-existing bulk RNAseq of in vivo isolated HBCs and single cell RNAseq of in vivo HBCs.

2019-02-01 | GSE103577 | GEO

RNAseq of murine small intestinal tissue following epithelium-specific deletion of Bcl9/9l +/- Apc +/- mutant B-catenin

Project description:RNAseq of murine small intestinal tissue following epithelium-specific deletion of Bcl9/9l +/- Apc +/- mutant B-catenin

| PRJEB30780 | ENA

RNAseq of mRNA from murine small intestinal crypts

Project description:RNAseq of mRNA from murine small intestinal crypts

| PRJNA758379 | ENA