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Sorbus aucuparia subsp. pohuashanensis

ABSTRACT: Sorbus aucuparia subsp. pohuashanensis Genome sequencing and assembly

PROVIDER: PRJNA716887 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14099032_1.fastq.gz	Fastqsanger.gz
	SRR14099032_2.fastq.gz	Fastqsanger.gz
	SRR14099033_1.fastq.gz	Fastqsanger.gz
	SRR14099033_2.fastq.gz	Fastqsanger.gz
	SRR14099034_1.fastq.gz	Fastqsanger.gz

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Genetic Diversity and Structure of Rear Edge Populations of <i>Sorbus aucuparia</i> (Rosaceae) in the Hyrcanian Forest.

Project description:Sorbus aucuparia (Rosaceae) is a small tree species widely distributed in Eurasia. The Hyrcanian forest is the southernmost distribution limit of this species. Severe habitat degradation and inadequate human interventions have endangered the long-term survival of this species in this region, and it is necessary to develop and apply appropriate management methods to prevent the loss of its genetic diversity. In this study, we used 10 SSR markers in order to evaluate the genetic diversity of this taxon. Leaf samples were collected from five known populations of S. aucuparia throughout its distribution area in the Hyrcanian forest. Expected heterozygosity ranged from 0.61 (ASH) to 0.73, and according to the M-ratio, all populations showed a significant reduction in effective population size, indicating a genetic bottleneck. Global FST was not statistically significant and attained the same values with and without excluding null alleles (ENA) correction (FST = 0.12). Bayesian analysis performed with STRUCTURE defined two genetic clusters among the five known populations, while the results of discriminant analysis of principal components (DAPC) identified three distinct groups. The average proportion of migrants was 22. In general, the gene flow was asymmetrical, with the biggest differences between immigration and emigration in Barzekoh and Asbehriseh. The Mantel test showed that there was no significant correlation between genetic distance (FST) and geographic distance in S. aucuparia. The best pathway for theoretical gene flow is located across the coast of the Caspian Sea and significant spatial autocorrelation was observed in only one population. In order to reduce the extinction risk of very small and scattered populations of S. aucuparia in the Hyrcanian forest, it is very important to establish and/or enhance the connectivity through habitat restoration or genetic exchange.

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