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Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

ABSTRACT: Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

PROVIDER: PRJNA716949 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14057300_1.fastq.gz	Fastqsanger.gz
	SRR14057300_2.fastq.gz	Fastqsanger.gz
	SRR14057400_1.fastq.gz	Fastqsanger.gz
	SRR14057400_2.fastq.gz	Fastqsanger.gz
	SRR14057500_1.fastq.gz	Fastqsanger.gz

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Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

Project description:The Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) virus has infected over 100 million people and caused over 2.5 million deaths worldwide. Yet, the molecular mechanisms underlying the clinical manifestations of COVID-19, as well as what distinguishes them from common seasonal influenza virus and other lung injury states such as Acute Respiratory Distress Syndrome (ARDS) remains poorly understood. To address these challenges, we combined transcriptional profiling of 646 clinical nasopharyngeal swabs and 39 patient autopsy tissues, matched with spatial protein and expression profiling (GeoMx) across 357 tissue sections. These results define both body-wide and tissue-specific (heart, liver, lung, kidney, and lymph nodes) damage wrought by the SARS-CoV-2 infection, which are a function both of viral load (high vs. low) and transcriptional signatures (splicing isoforms, T-cell receptor expression, cell state regression). These findings reveal a massive disruption of cellular and transcriptional pathways from COVID-19 that can inform subsequent studies on the pathophysiology SARS-CoV-2 as well as other viruses.

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