Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil

ABSTRACT: Hydration-Desiccation cycle - Raw reads

PROVIDER: PRJNA718159 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14094608_1.fastq.gz	Fastqsanger.gz
	SRR14094608_2.fastq.gz	Fastqsanger.gz
	SRR14094609_1.fastq.gz	Fastqsanger.gz
	SRR14094609_2.fastq.gz	Fastqsanger.gz
	SRR14094610_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 46

Similar Datasets

Dynamic transcriptional response of Microcoleus vaginatus to hydration and dehydration in a desert biological soil crust

Project description:Biological soil crusts (BSCs) are cyanobacteria-dominated microbial communities that cover extensive portions of the world’s arid and semi-arid deserts. The infrequent periods of hydration are often too short to allow for dormancy strategies based on sporulation; consequently, survival is based on the unique capabilities of vegetative cells to resuscitate from and re-enter a stress resistant dormant state, one of which is migration within the crust layers in response to hydration. In this study, we sought to characterize the events that govern the emergence of the dominant cyanobacterium from dormancy, its subsequent growth, and the events triggered by re-desiccation and a transition back to dormant state. We performed a 48 hour laboratory wetting experiment of a desert BSC and tracked the response of Microcoleus vaginatus using a whole genome transcriptional time-course including night/day periods. This allowed the identification of genes with a diel expression pattern, genes involved uniquely in the signaling after hydration and those that contribute primarily to desiccation preparation.

2012-10-30 | GSE40188 | GEO

Dynamic transcriptional response of Microcoleus vaginatus to hydration and dehydration in a desert biological soil crust

2012-10-30 | E-GEOD-40188 | biostudies-arrayexpress

Desiccation induces varied responses within a soil bacterial genus

Project description:Nine Curtobacterium strains (three from three clades) were subjected to a lab desiccation experiment with no access to moisture or nutrients to compare between clades. RNA was extracted at days 0, 1, and 32 and sequenced

2024-04-19 | GSE230266 | GEO

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Single-cell RNA-seq of rice roots grown in gel, non-compacted soil and compacted soil conditions

Project description:We report both raw and processed scRNA-seq profiling reveals how root tissues adapt to soil conditions and compaction stress

2024-02-01 | GSE251706 | GEO

Polypedilum vanderplanki

Project description:Polypedilum vanderplanki transcriptome during desiccation-rehydration cycle

| PRJNA312200 | ENA

Endogenous miRNA targets identified by sequencing of the Soybean degradome

Project description:To identify more targets in soybean, particularly specific targets of Cd-stress-responsive miRNAs, high-throughput degradome sequencing was used. In total, we obtained 8913111 raw reads from the library which was constructed from a mixture of four samples (HX3-CK, HX3-Cd-treatment, ZH24-CK and ZH24-Cd-treatment). After removing the reads without the CAGAG adaptor, 5430126 unique raw-reads were obtained. The unique sequences were aligned to the G. max genome database, and 6516276 reads were mapped to the genome. The mapped reads from the libraries represented 51481 annotated G. max genes.

2013-12-20 | GSE50063 | GEO

Drosophila melanogaster

Project description:Drosophila melanogaster desiccation selection raw sequence reads

| PRJNA306702 | ENA

Transcriptome of Hymenophyllum dentatum during a desiccation-rehydration cycle

Project description:A study to explore the transcriptome response of hymenophyllum dentatum in a desiccation-rehydration cycle using high-throughput sequencing (Illumina).

2019-11-19 | GSE140234 | GEO

Transcriptome of Hymenophyllum caudiculatum during a desiccation-rehydration cycle

Project description:A study to explore the transcriptome response of hymenophyllum caudiculatum in a desiccation-rehydration cycle using high-throughput sequencing (Illumina).

2019-11-19 | GSE140238 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data