Project description:The collection of baseline health data is an essential component of an endangered species conservation program. As for many wildlife species, there are minimal health data available for wild populations of the endangered Carnaby's cockatoo (Zanda latirostris). In this study, 426 wild Carnaby's cockatoo nestlings were sampled from nine breeding sites throughout the range of the species over an 11-year period. In addition to a physical examination, samples were collected to test for hematologic and biochemical parameters, psittacine beak and feather disease virus (BFDV), avian polyomavirus (APV), psittacine adenovirus, psittacine herpesvirus, Chlamydia, disease serology and endoparasites. Environmental sampling was performed to screen for BFDV and APV in nest hollows. Descriptive health data are presented for nestlings of this species, with BFDV, APV and Chlamydia infections reported. Reference intervals for hematologic and biochemical parameters are presented in three age groups, and factors affecting blood analytes and body condition index are discussed. This longitudinal dataset provides insights into health parameters for Carnaby's cockatoo nestlings and a reference for future monitoring of breeding populations.
Project description:The use of anthropogenic resources is becoming increasingly common as species adapt to human-induced environmental changes, but their use can expose species to new risks. Understanding how animals exploit these resources is important for guiding conservation management, particularly where species are threatened. The introduction of canola cropping to breeding areas of endangered Carnaby's cockatoo (Zanda latirostris) has been attributed to an increase in the birds' reproductive success; however, the seed may be protein-limiting for nestling growth and its use by cockatoos has been implicated in the emergence of a new disease. We used high-resolution accelerometer-capable GPS tags to track eight birds. Accelerometer data were used to calculate overall dynamic body acceleration (ODBA), a proxy for energy expenditure, and to identify and quantify canola and native vegetation foraging behaviours. We used linear mixed models to determine which factors affected patterns of resource use and to determine whether, and to what extent, canola use was associated with reduced energetic and movement costs. We then compared the energetic content of canola seed and native food sources to inform patterns of behaviour and habitat use revealed by our tracking data. Use of canola was associated with reduced movement costs and energy expenditure. However, there was an apparent reluctance to increase foraging on canola above a threshold of time, even when conditions reduced time available to utilise native food sources. While anthropogenic resources may appear to improve population trends in some cases, careful investigations of patterns of resource use are necessary to guide appropriate conservation management efforts. For Carnaby's cockatoos, conservation efforts should focus on retention, protection and expansion of native food sources.
Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.
Project description:Whole genome sequencing of the Arabidopsis thaliana dot5-1 transposon insertion line described in Petricka et al 2008 The Plant Journal 56(2): 251-263.
Project description:The analysis identifies differentially occupied genomic regions of H2Bub1, H3K79me3, and H3K27ac by RNF40 silencing in HCC1806 cells