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Coprinopsis cinerea

ABSTRACT: Coprinopsis cinerea Raw sequence reads

PROVIDER: PRJNA720896 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR14203525_1.fastq.gz	Fastqsanger.gz
	SRR14203525_2.fastq.gz	Fastqsanger.gz
	SRR14203526_1.fastq.gz	Fastqsanger.gz
	SRR14203526_2.fastq.gz	Fastqsanger.gz

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Project description:This SuperSeries is composed of the following subset Series: GSE37942: Comparison of gene expression during meiosis between wild-type and rad50-deficient strains of Coprinopsis cinerea GSE37943: Comparison of gene expression during meiosis between wild-type and msh5-deficient strains of Coprinopsis cinerea Refer to individual Series

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Project description:Coprinopsis cinerea strain:Okayama 7 Raw sequence reads

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Blue light exposure and nutrient conditions influence the expression of genes involved in simultaneous hyphal knot formation in Coprinopsis cinerea.

Project description:To identify genes express in earliest stage of fruiting body initiation in Coprinopsis cinerea, strain #326 (AmutBmut haploid fruiting strain), genes expressed at 0, 0.5, 1, 3h after light exposure were compared by Super-SAGE Approximately, 1 million tags were sequenced from each mycelial sample to obtain 65,535 unique tags. First, we made matches between the tags and predicted genes of the WT strain, and 24.4% tags matched to predicted genes. Tags of 11.4% genes that did not match with predicted genes matched with the genome sequence of strain #326, and 64.1% of unique tags (2.5~4.5% of total tag counts) were not identified in the #326 genome sequence. In tags that matched to #326 strain genome, we obtained reads 1,000 bp upstream of the genome sequence from the tags, and found that 81% of 1000 bp upstream genome sequences contain predicted genes. The tag counts that matched the same predicted genes were incremented, and fisher’s exact test was carried out using IDEG6

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