Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Parallel reduction in flowering time enabled evolutionary rescue and establishment in a colonizing Arabidopsis lineage

PROVIDER: PRJNA721260 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14210400_1.fastq.gz	Fastqsanger.gz
	SRR14210400_2.fastq.gz	Fastqsanger.gz
	SRR14210500_1.fastq.gz	Fastqsanger.gz
	SRR14210500_2.fastq.gz	Fastqsanger.gz
	SRR14210600_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 672

Similar Datasets

CVI Arabidopsis

Project description:Parallel reduction in flowering time from de novo mutations enabled evolutionary rescue in colonizing lineages

| PRJEB39079 | ENA

CVI_ADAPT

Project description:Parallel loss of function at major flowering time loci underlie adaptive rescue in colonising Arabidopsis lineages

| PRJEB38927 | ENA

Project description:Parallel gene loss underlies success in a colonizing Arabidopsis lineage

| PRJEB44201 | ENA

Parallel gene loss underlies success in a colonizing Arabidopsis lineage

Project description:Loss of flowering time genes in parallel in two islands underlies adaptation to new environment

2022-01-11 | PRJEB44201 | EVA

Project description:Alfalfa flowering time

| PRJNA817856 | ENA

On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

Project description:In plants, CG DNA methylation is prevalent in the transcribed regions of constitutively expressed genes (“gene body methylation; gbM”), but the origin and function of gbM remain unknown. Here we report the discovery that Eutrema salsugineum, has lost gbM from its genome, the first known instance for a flowering plant. Of all known DNA methyltransferases, only CHROMOMETHYLTRANSFERASE 3 (CMT3) is missing from E. salsugineum, indicating that CMT3 may be required for the establishment of gbM. Detailed analyses of gene expression, the histone variant H2A.Z and various histone modifications in E. salsugineum and Arabidopsis thaliana epiRILs turned up no evidence in support of any role for gbM in regulating transcription or affecting the composition and modifications of chromatin over evolutionary time scales.

2016-07-11 | GSE75071 | GEO

High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

Project description:Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing MSH-dr lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth.

2014-01-01 | GSE36783 | GEO

Transcript profiling of Arabidopsis epiF3 plants

Project description:Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing msh1 lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth.

2013-12-01 | GSE43993 | GEO

Transcriptome analysis of two Arabidopsis accessions

Project description:Plants integrate seasonal cues such as temperature and day length to optimally adjust their flowering time to the environment. Compared to the control of flowering before and after winter by the vernalization and day length pathways, mechanisms that delay or promote flowering during a transient cool or warm period, especially during spring, are less well known. Due to global warming, understanding this ambient temperature pathway has become increasingly important. FLOWERING LOCUS M (FLM) is one critical flowering regulator of this pathway in Arabidopsis thaliana. We identified the Arabidopsis accession Kil-0 as an early flowering strain when compared to the common reference accession Col-0. Genetic mapping of this trait identified a causative region of around 31 kb at the bottom of chromosome one. Within this region, only FLOWERING LOCUS M (FLM) was expressed at a significantly lower level in Kil-0 when comparing RNA-seq (RNA sequencing) data from 10-day old Kil-0 and Col-0 plants grown at 21C. Furthermore, FLM was also the gene with the greatest reduction in gene expression between Kil-0 and Col-0 when we specifically analyzed 267 genes with a role in flowering time regulation what strongly suggested that FLM is the major locus that results in accelerated flowering in Kil-0.

2015-08-28 | E-MTAB-4473 | biostudies-arrayexpress

High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

2014-01-01 | E-GEOD-36783 | biostudies-arrayexpress