Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic study of aquifer sediments from the Hetao Basin, China

PROVIDER: PRJNA722098 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14264037_1.fastq.gz	Fastqsanger.gz
	SRR14264037_2.fastq.gz	Fastqsanger.gz
	SRR14264038_1.fastq.gz	Fastqsanger.gz
	SRR14264038_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Project description:high As aquifer sediments

| PRJNA935918 | ENA

Project description:Microbial Community in High Arsenic Shallow Aquifers in Hetao Basin of Inner Mongolia, China by 454 Pyrosequencing

| PRJEB7956 | ENA

Metabolic traits of size-fractionated microbial communities at an oceanic deep chlorophyll maximum waters revealed via metaproteomics

Project description:we applied metaproteomic approach to capture proteins from three size-fractionated microbial communities at the DCM in the basin of the South China Sea. The deep recovery of proteomes from a marine DCM plankton assemblage provides the highest resolution of metabolic activities as well as microbial niche differentiation, revealing a spectrum of biological processes carrying out by microbes at DCM of the SCS.

2020-12-21 | PXD016812 | Pride

Project description:Metagenomic Sequencing of sediments from mangrove contained estuary in China

| PRJNA472209 | ENA

Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes

Project description:Chemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome.

2023-04-26 | PXD028583 | Pride

Metagenome from subsurface aquifers

Project description:Metagenomic study on subsurface aquifer biofilms that are dominated by archaea

| PRJEB6121 | ENA

sediment metagenome

Project description:metagenomic studies of the urban river sediments of Zhengzhou city, China

| PRJNA551779 | ENA

Project description:Mangrove sediments metagenomic

| PRJNA767118 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Microbe sample from soil fungal properties in the Hetao Irrigation District, China

Project description:Microbe sample from soil fungal properties in the Hetao Irrigation District, China

| PRJNA1191152 | ENA