Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Jaculus jaculus strain:Lab Born/Non-Inbred

ABSTRACT: Jaculus jaculus Genome Sequencing

PROVIDER: PRJNA72445 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR350202_1.fastq.gz	Fastqsanger.gz
	SRR350202_2.fastq.gz	Fastqsanger.gz
	SRR350203_1.fastq.gz	Fastqsanger.gz
	SRR350203_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 49

Similar Datasets

Jaculus jaculus

Project description:Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1, paternal haplotype

| PRJNA773798 | ENA

Condylura cristata strain:Lab Born/Non-Inbred

Project description:Condylura cristata Genome Sequencing

| PRJNA72447 | ENA

Microtus ochrogaster strain:Lab Born/Non-Inbred

Project description:Microtus ochrogaster Genome Sequencing

| PRJNA72443 | ENA

Jaculus jaculus isolate:mJacJac1

Project description:Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1, maternal haplotype

| PRJNA773797 | ENA

Renal transcriptome of the desert adapted Jaculus jaculus during water restriction and rehydration

Project description:Jaculus jaculus were split into three experimental groups: control (water access ad libitum), dehydrated (11 days water restriction), and rehydrated (7 days water restriction followed by 3 days water ad libitum). Kidney samples were extracted and sequenced to investigate changes in gene expression during osmotic challenge in a desert adapted model.

2023-07-04 | GSE225470 | GEO

Saimiri boliviensis boliviensis strain:Lab Born/Non-Inbred

Project description:Bolivian squirrel monkey genome sequencing

| PRJNA67945 | ENA

Renal transcriptome of the desert adapted Jaculus jaculus during water restriction and rehydration

Project description:Renal transcriptome of the desert adapted Jaculus jaculus during water restriction and rehydration

| PRJNA935758 | ENA

Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus

Project description:Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus

| PRJNA988052 | ENA

microRNA-sequencing of inbred mouse strain hippocampus and frontal cortex

Project description:Purpose: We carried out small RNA sequencing to determine miRNA expression patterns of hippocampus and frontal cortex in six inbred mouse strains. We analyzed miRNA expression levels, isomiR distribution and miRNA editing events. Methods: We constructed small RNA libraries starting from the total RNA extracted from the hippocampus and frontal cortex of three animals per strain. The sequencing was carried out using Illumina HiSeq2000 (single-end). The sequence reads that passed quality filters were mapped to the mouse genome (mm10) and to known miRNAs (miRBase v21) using miRDeep2, SeqBuster, and sRNAbench, to obtain miRNA and isomiR expression levels and to predict novel miRNAs. Genome alignments were analysed for miRNA editing using FreeBayes. Results: We detected significant miRNA and isomiR expression level differences between the strains and brain regions. Most of the miRNA loci produced a number of isomiRs. Some miRNAs were consistently edited with a pattern that matches the activity of known RNA editing enzymes.

2018-01-18 | GSE84408 | GEO

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data