Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Soil microbiome survey of Populus angustifolia

PROVIDER: PRJNA726831 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14385800_1.fastq.gz	Fastqsanger.gz
	SRR14385800_2.fastq.gz	Fastqsanger.gz
	SRR14385900_1.fastq.gz	Fastqsanger.gz
	SRR14385900_2.fastq.gz	Fastqsanger.gz
	SRR14386000_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1078

Similar Datasets

Transcription profiling of Populus leaves under nitrogen limitation

Project description:Gene expression response of Populus plants subjected to hydroponic nitrogen manipulation was analyzed using the Affymetrix poplar genome microarrays. Experiment Overall Design: Populus fremontii x angustifolia genotypes were grown hydroponically with either 5 mM (N+) or 0.125 mM (N-) nitrogen. Young and mature leaves at Leaf Plastchron Index (LPI) 2 and 5, respectively, were sampled 4 weeks after the start of low N feeding. Two biological replicates were obtained for each condition.

2009-02-08 | E-GEOD-14515 | biostudies-arrayexpress

Transcription profiling of Populus to investigate wound-induced gene expression changes: 90 hours; clone RM5

Project description:Gene expression response of Populus plants subjected to leaf wounding was analyzed using the Affymetrix poplar genome microarrays. Experiment Overall Design: Populus fremontii x angustifolia genotypes were grown hydroponically.Â Wounding treatment was applied by pinching leaves at Leaf Plastchron Index (LPI) 8-12 with pliers at a rate of 10 1-inch wounds per leaf.Â Root tips (terminal 1 cm) and mature leaves (LPI 5) were sampled 90 hours after the treatment. Two biological replicates were obtained for each condition.

2009-12-14 | E-GEOD-16785 | biostudies-arrayexpress

Transcription profiling of Populus wound induced gene expression changes 1 week; clone RM5

Project description:Gene expression response of Populus plants subjected to leaf wounding was analyzed using the Affymetrix poplar genome microarrays. Experiment Overall Design: Populus fremontii x angustifolia genotypes were grown hydroponically.Â Wounding treatment was applied by pinching leaves at Leaf Plastchron Index (LPI) 8-12 with pliers at a rate of 10 1-inch wounds per leaf.Â Young (LPI 0 and LPI 1) and mature leaves (LPI 5) were sampled 1 week after the treatment. Two biological replicates were obtained for each condition.

2009-12-05 | E-GEOD-16783 | biostudies-arrayexpress

Transcription profiling of Populus leaves under nitrogen limitation: clone 3200

Project description:Gene expression response of Populus plants subjected to hydroponic nitrogen manipulation was analyzed using the Affymetrix poplar genome microarrays. Experiment Overall Design: Populus fremontii x angustifolia genotypes were grown hydroponically with either 5 mM (N+) or 0.125 mM (N-) nitrogen. Young leaves at Leaf Plastchron Index (LPI) 2 were sampled 4 weeks after the start of low N feeding. Mature leaves at Leaf Plastchron Index (LPI) 5 were sampled 4 or 8 weeks after the start of low N feeding. Two biological replicates were obtained for each condition.

2009-03-01 | E-GEOD-14893 | biostudies-arrayexpress

Populus angustifolia

Project description:Populus angustifolia overview

| PRJNA701348 | ENA

Genome-wide analysis of histone H3 lysine 9 acetylation in Populus trichocarpa under drought stress

Project description:We report on the genome-wide distribution pattern of histone H3 lysine 9 acetylation (H3K9ac) and the pattern’s association with whole genome expression profiles in Populus trichocarpa subjected to soil-water depletion. We identified a set of drought responsive genes whose expression is directly regulated by differential modification of H3K9ac.

2018-12-27 | GSE81047 | GEO

Project description:GSL Soil Microbiome Survey

| PRJNA1131005 | ENA

Project description:Polar soil microbiome survey

| PRJNA781801 | ENA

Populus fremontii x Populus angustifolia

Project description:Populus fremontii x Populus angustifolia overview

| PRJNA124055 | ENA

Comparison of gene expression in roots from Populus trichocarpa and Populus deltoides colonized with Laccaria bicolor

Project description:The majority of trees live in association with symbiotic fungi, which facilitate their access to soil nutrients. The ectomycorrhizal symbiosis represents a complex biological system involving multifaceted interactions between the two partners. The establishment of the symbiosis depends on various conditions (e.g. climate), but also on the genetic traits of the partners. To evaluate the impact of the genetic predisposition on the development and functioning of ectomycorrhizas, we compared the transcriptome of roots from Populus trichocarpa and Populus deltoides colonized with Laccaria bicolor.

2011-01-15 | GSE26416 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data