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Genome-wide chromatin accessibility and DNA methylation of wildtype zebrafish livers at 120 hpf

ABSTRACT: Genome-wide chromatin accessibility and DNA methylation of wildtype zebrafish livers at 120 hpf

PROVIDER: PRJNA727017 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14410031_1.fastq.gz	Fastqsanger.gz
	SRR14410031_2.fastq.gz	Fastqsanger.gz
	SRR14410032_1.fastq.gz	Fastqsanger.gz
	SRR14410032_2.fastq.gz	Fastqsanger.gz
	SRR14410033_1.fastq.gz	Fastqsanger.gz

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Genome-wide chromatin accessibility and DNA methylation of wildtype zebrafish livers at 120 hpf

Project description:The goal of this study is genomic chromatin accessibility of 120 hpf zebrafish livers by ATAC-Seq. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) and the DNA methylation profile using reduced representation bisulfite sequencing (RRBS).

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RNA-Seq of 120 hpf control sibling and mutant uhrf1 hi272 zebrafish livers

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Comparing the genome-wide chromatin accessibility of uhrf1 hi272 mutants and phenotypically wildtype whole zebrafish embryos at 120 hpf using ATAC-Seq.

Project description:The goal of this study is to study the chromatin accessibility differences between control and uhrf1 hi272 mutant 120 hpf zebrafish embryos (uhrf1 hi272+/-, Tg(fabp10a:CAAX-EGFP) using ATAC-Seq technique.

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Transcriptomic profiling of the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf

Project description:In this dataset we performed RNA-seq on pools of livers dissected at 120 hpf from dnmt1(s904) mutants and phenotipically wild-type looking siblings.

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Project description:Gene expression analysis of 120 hpf zebrafish livers following 24 hour iAs exposure

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Project description:This study was carried out to compare the changes in gene expression in livers of 120 hpf control sibling and mutant uhrf1-hi272 zebrafish larvae in response to treatment with DMSO or Palbociclib (PD)

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Transcritomic analysis in untreated and sodium arsenite treated (96-120 hours post fertilization; hpf) in pooled (12-15) zebrafish larval livers 5 days post fertilization (dpf): wild-type TAB5 compared to as3mt mutant larvae

Project description:This study was carried out to compare the changes in gene expression in 5 dpf zebrafish larval livers in response to mutation of the arsenic methylation gene (as3mt) - 8 bp deletion in exon 3 with and without 1 mM sodium arsenite treatment (96-120 hpf)

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Transcriptomic profiling of whole larvae and the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf

Project description:This SuperSeries is composed of the SubSeries listed below which has both RNAseq (from whole larvae and pools of dissected livers) and methylome profiling using reduced representation bisulfite sequencing (from whole larvae) at 120 hours post-fertilization (hpf).

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2017-11-12 | GSE104953 | GEO

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